| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3560 |
|---|
| Symbol | |
|---|
| ID | 8359727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4439956 |
|---|
| End bp | 4442331 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965731 |
|---|
| Product | Protein of unknown function DUF1963 |
|---|
| Protein accession | YP_003123225 |
|---|
| Protein GI | 256422572 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3878] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00826775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0597462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCG AACAGGTAAA AGACAACAAC TATGTTTCTT TTATTACTGC CGGTCTGAAT
AAAGTCAGCT TTTATAAAAA ATATCCCGGT GCTGATCTTA CCGCCCGTTT TCATGCAAGT
TGCCCGGAAC AACGAGGCGC CCTTGACGTG ATCAGCGACA AGACATTACC TGTTGCCGGA
CATACCGCTT TAGTACGTAC CGCTAAGTCT GCAGACGGCT TCTTCTTTTA TTATTTCGGC
CTGGTACAGA TTAACGAGAA CTATTGTTAC ACCATCATCG CCGATTGTGA TGTCGAGGAA
GCCGCTGAAT ATGAGCCTAT ATTCGATGAA ATATGGCAAA GCCTGCAATA CTTCGGTAAT
CAGGAAGAAG GACTGAAACA ACAGGAAGCA GGCATTGACG AAATCCTTTC TAAATACGCA
GCTTCAGAAG ACACTGCAGC GCAAAAAGAG AAAACGCCCG TCGCACCTTT TAGCGTTCCT
GCTGATGGAC ATGATTATTG GGAACTGGAT GATTATCAAC TCCGTTTTCT GTCCGGCAGT
GATATATCGG TGTCCGACGG CGATGGCGCA TTGTATATCA AACTGGAGGC AGAAATGCCC
GATTACGACG ATAAAAAACA CGGACATCTG CTCAATGATT ATGAGCATGG TAGGGTGTAC
CTGCAGTTTT ACTTCAAAGG CATCTATAAA AACGGCATTC CTACCGGCAT ATTTACTTTC
GAAGATGAAC GGGACAGCTC CTACCTGACC TACCTCTGGA AAGGCGGATT TCACTATAGC
CTGCAATTCA CGGGTGAAGT CACCTTACAG GACGGCTGGC TGGGTATCAA CGGACATTTC
GGCAACTACC CGGTAACGAT CGCAAAGCAA CTACCACTGG AAGATATCAA GTGGGAAAAC
TACCGTTTCC TGCGTGTAGA AGAACTGGAA ACTGCCTCCC CTGCTATTGT GCGCCATCTG
CAACTGACAG ACCCTTATCC GGCTTTGCTA CATGAGACAT TAGCACCGCT GAAAGAGATG
GAAACATTGC ATATTTCTTT TTCTGCGGAT AAGCCTTCGG CGGCCGACTT CAAAGAAGTA
CCCAAACCGC TTAAACATTA TAAATCACTC CGTAAACTGA CACTCTCAGG TATCCGCGCG
GTGGATAGTC TGCCGCAATG GATCGGCGAC CTGAAAGAAC TGGAACACCT GTACGTGTCA
GAGAGCAAAA TCGAAGGCAT CCATCCTTAT ATCTTCCAGC TACCGAAACT GAAATTCTGC
TACCTGAGCA ATAACCAGTT ACAGTCCATT TCACCCGGAC AGTCAGATTC CCTGGAAACC
CTGACCATAG AGAATAACCA GCTGACTTCC CTCCCGGATT CACTGACAAA AATGCCTAAG
CTGAAATCGC TGAGCATCAA AGGGAATCCG TTGACGAAAC TGCCTCCCGG ACTGGAAACC
ATTGAACACC TGGACCTGGA ACTGGAAAAG AAAATGACGC TGCTGGATTA TAGTTATAAA
GGGGCGGACG ACCAGGGTAC CGTTCCGATT GATCAGGCGC TGTTCCTGGC GAAACATGAC
AACAAACTGT CTGACAAACT GGAACAGGCC ATTGCGGCAC AGGAACTCCA ATACTATCAG
AAGGGACTAA CGGAACTGGC CCGTAAATCT GTGGCCTTTG CAACGACGAA GGAAGACAAT
TATGCAGGTA AAGGGAACAA CCGTTTCGGC GGATTACCAG ACTTACCTGC GGGTGTAGCT
TACCCTTCCT TCAAAGATTA TGAGGGCAAT GAAAAGGGTA TGCAGTTTAT TGCACAGATC
AATTGTACCG ATATAGCACA TTTACAGGAT TACCTGCCCC GTACCGGCAT CCTGTATTTC
TTCATAGAAG ACCAGGAAGA CACAGATGCA TCCGTGATCT ACTACGACGG CGATCTGTCC
ACCCTGCAAT CTGCCAGTCA ACTGGATATT ACTGAAGACT ACATCTATGA CCAGCACGGC
ATTTATACCC CTTATAAAGC CATTGCGGAC AAATATGTCA GTCTGCCGTT CTTCTACAAT
GCCAGGGAAT ATTACGAGAC ATCCTGGCCG GAACTGGAAC CATTAGAGGA AGAGGATGAT
GCTACGGATG CCTTAAAACA GGCATTAGAG CCTGATTTCA AGGCTGTACA CAGTATCAAC
AGTTATGTTT TCAAACAGCA TGATACGCCT GAAAAAGAGG CCGCACATAC CTTAAAAGGC
AAACCAGAGG ACTGGATGGT GTTATTACGG GTAAGTAGTG ATAGTCAGCC GGGATTCTGT
TTCTGGGATG CGGGAGAGAT CTACTTCATG ATCCATAAGA GCGATCTCGC GAAGAAGAAC
TTTTCGAAGG TTTACTGCGG ACTGGAAAGC AGCTGA
|
|---|
| Protein sequence | MKAEQVKDNN YVSFITAGLN KVSFYKKYPG ADLTARFHAS CPEQRGALDV ISDKTLPVAG
HTALVRTAKS ADGFFFYYFG LVQINENYCY TIIADCDVEE AAEYEPIFDE IWQSLQYFGN
QEEGLKQQEA GIDEILSKYA ASEDTAAQKE KTPVAPFSVP ADGHDYWELD DYQLRFLSGS
DISVSDGDGA LYIKLEAEMP DYDDKKHGHL LNDYEHGRVY LQFYFKGIYK NGIPTGIFTF
EDERDSSYLT YLWKGGFHYS LQFTGEVTLQ DGWLGINGHF GNYPVTIAKQ LPLEDIKWEN
YRFLRVEELE TASPAIVRHL QLTDPYPALL HETLAPLKEM ETLHISFSAD KPSAADFKEV
PKPLKHYKSL RKLTLSGIRA VDSLPQWIGD LKELEHLYVS ESKIEGIHPY IFQLPKLKFC
YLSNNQLQSI SPGQSDSLET LTIENNQLTS LPDSLTKMPK LKSLSIKGNP LTKLPPGLET
IEHLDLELEK KMTLLDYSYK GADDQGTVPI DQALFLAKHD NKLSDKLEQA IAAQELQYYQ
KGLTELARKS VAFATTKEDN YAGKGNNRFG GLPDLPAGVA YPSFKDYEGN EKGMQFIAQI
NCTDIAHLQD YLPRTGILYF FIEDQEDTDA SVIYYDGDLS TLQSASQLDI TEDYIYDQHG
IYTPYKAIAD KYVSLPFFYN AREYYETSWP ELEPLEEEDD ATDALKQALE PDFKAVHSIN
SYVFKQHDTP EKEAAHTLKG KPEDWMVLLR VSSDSQPGFC FWDAGEIYFM IHKSDLAKKN
FSKVYCGLES S
|
|---|
| |