| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2501 |
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| Symbol | |
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| ID | 8358659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3076829 |
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| End bp | 3078805 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644964687 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_003122190 |
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| Protein GI | 256421537 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.79319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAC CACAAATGGA TCAGGCTGTA CGCCAGACCA GTGACGATGT GATCGAACAC
GCGTTCGACC AGGCTACACG CTGGACACGA GATTATGTAT TCGATATCCT GAAAGATTTG
GGTATCCATT ATATTTTCGG TGTACCAGGG ACCAATGAAA TTCCCATTAT AGACGGTACT
TCTTATCCGG AAAATGAAGT ACGTTATATT GAGTGTCTTC ATGAAAACAT TGCGATTGGC
GCGGCAATGG GATCTGCCCG GATGACTGGT AAACCAGGAG TACTGGTTGT ACACGTTACT
CCCGGTATTG CCCATAGTAT CGGCAACTTG TTCAATGCAT ACCGTTCCCA GGTACCACTG
GTAATTCTTT GTTGCCAGCA ACAGAATGAA TTGATCACAC AGGAACCACT GCTGGCCTCT
AATCTGGTAG ACCTTGCCAG ACAATACACT AAATGGGCGC ATGAAGTACG TACCCCTGAG
GAAATTCCAT TAGTATTACA ACGTGCCTTT AAAGAAGCTA TGGCGCCCCC TAATGGACCT
GTGTTCGTAT CAATCCCATG GGACTTTACG ATGGTTGCTA TTGAGGATGA CGATAAGGTC
AAAGGAGTAA CCCGTATATC TCCACATTTT ACAGGCGATA ATGACGCTAT CAGACAAGCA
GCAGCTATTC TTTCCGCAGC TAAGAATCCT GTTATAGTAG CCGGTGATGC AGTTGGCTAT
GCAGACGCCT GGGCGGAATT GCAGGAATTG GCTGAACTGT TGGGTGCACC GGTCGTATTA
CAAAGCTTTA GCAGTCTGGC TAATTTCCCT AATAATGATT ATCACTGGCA GGGAGAATTG
CCTGGAAGTC AGGCGGGTGT CCAGGGCGTA TTTAAAGATC ATGATGTAGC ATTCCTGATC
GGATTTGGCG CACAGGCACA GTTGGCTGTA TATAAATATT CCGACGGACC GCTGTTCCCT
CCTGAACTGA CACAGGTATA CCTCACGAAT AATACCTGGG ATATTGCGAA GAACTATTAT
GGAGAAGCGG CGATCTTTGG TGATATTAAA GCAACACTGC CTATTCTGAA CGATTATATT
AAGCCTGCTC CGCCGGAAGG TGCTGCTGCC AGAAATGAAA AGATGCGCTT ATTAGCAGTA
AAAAGAGCAG TGGACTGGGA TGCATATCTG CTGGAAGCAA TGGAGCAGGA AGATATATGG
TCTGTCGTTA TCGCTAAAGC ATTGAAAGAA GAAATTGAAG AAAGGGAACT GGTAGACGAC
TTCGTATACG TGCATGAGGC GGTATCTGAT GGCGCTCCTT TCCAATATTA TCTGCCATTC
AGTACTAATG GAGCCAAACC GGTAAGCTAT TACTGTGTAG CAGGAGGTTC ACTAGGTTGG
TCAATGCCGG CATCACTGGG TATCAAACTG GAGAATGCTT CATCACAGGG GACAGGTACG
AAGCTGGTGA TTAATGCCGT GGGAGATGGT TCTTCGCTGT TTTATCCACA GACCTACTGG
ACGGCAGCAC ATGAGCAGCT ACCTATTCTG TATATCATTA CAAATAACCA GGAATACCAT
ACCCTGCAAC TGGGATTAGA ACAGGTAGTT GGTGCTTACG GCAGTGCACC TGGTTATGGC
TGGAAACCCA AAACGATGGA TCCGCCGTAT CTGCGTCTTG AAAGACCCAA GCTCGACTTC
GTATCACTGG CAAAAGCATT CGGTGGTGAG AACGGAGAAG TGGTGGAAAC ACCAGGAGCA
GTGAAGGGAG CGATCAAACG AGGCATTGAT CATGTACTCA ATAATACTAC ATCTTATATA
CTTGATATGA GAATAGCAGG CAATACGCCG ACAGCTCCAT CCACATCTGA CGCTATCACC
GCTTATTACA GCAAGCAACC GGTATTGGAT TATTTCCACC AGGATACGGT AAAAGCAAAA
CTGTTGTCCG TAGCTACTAA CAGACATATA CCATCCAACA TTCCTTCAAT CTTCTAA
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| Protein sequence | MKTPQMDQAV RQTSDDVIEH AFDQATRWTR DYVFDILKDL GIHYIFGVPG TNEIPIIDGT
SYPENEVRYI ECLHENIAIG AAMGSARMTG KPGVLVVHVT PGIAHSIGNL FNAYRSQVPL
VILCCQQQNE LITQEPLLAS NLVDLARQYT KWAHEVRTPE EIPLVLQRAF KEAMAPPNGP
VFVSIPWDFT MVAIEDDDKV KGVTRISPHF TGDNDAIRQA AAILSAAKNP VIVAGDAVGY
ADAWAELQEL AELLGAPVVL QSFSSLANFP NNDYHWQGEL PGSQAGVQGV FKDHDVAFLI
GFGAQAQLAV YKYSDGPLFP PELTQVYLTN NTWDIAKNYY GEAAIFGDIK ATLPILNDYI
KPAPPEGAAA RNEKMRLLAV KRAVDWDAYL LEAMEQEDIW SVVIAKALKE EIEERELVDD
FVYVHEAVSD GAPFQYYLPF STNGAKPVSY YCVAGGSLGW SMPASLGIKL ENASSQGTGT
KLVINAVGDG SSLFYPQTYW TAAHEQLPIL YIITNNQEYH TLQLGLEQVV GAYGSAPGYG
WKPKTMDPPY LRLERPKLDF VSLAKAFGGE NGEVVETPGA VKGAIKRGID HVLNNTTSYI
LDMRIAGNTP TAPSTSDAIT AYYSKQPVLD YFHQDTVKAK LLSVATNRHI PSNIPSIF
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