Gene Cpin_1797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1797 
Symbol 
ID8357948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2180654 
End bp2181688 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content50% 
IMG OID644963985 
ProductTerpene synthase metal-binding domain protein 
Protein accessionYP_003121494 
Protein GI256420841 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.483748 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGTATC CTACATTCAG CATTCCTGCG CTGTATTGCC CCTTCAATTC CCAGATCAGT 
CCTTACGCCA GTTCCGTCGA AGCGCATACT ACACAATGGG TGGAGCGGTT TGGGCTGCAT
GAGGCGATCC GTGGGTACCG GGAGGCTAAA TTTGCCTATA TGACCTCCCG TTTTTATCCC
ACAGCGGAGT ATGGACGCCT CTGTCTGGCC AATGACCTCC TGGTATTACT TTTTCTGATG
GATGACATCT TTGATAACAA GGATGAAGAA GCACAGCATC CGGAGAACCT TAAAAAATTG
CTTTATGCCT GCCTGGGTAT CCTGAAAGAC GGCCACCGTT ACACCCTGGA GGACTGGCAG
AACAGGCAGA CGCCCGATAA GGATATTGTG CATAAAAGCA TTACCCAGGC GATGGTAGCA
AAAGGACATA TGAACATCCT GGCAGCGCTG ACCGATGTAT GGCAGCGGGT ACAGGCCTGT
ACTTCCCTCA GTTATCAGCA GACCTTTGTG CAGGATATGT TCAAACTGTT CAATGCCGTC
AACTGGCAGA ACCAGAATGT CAATGCGGAC CGTATACCCT CAGTCGCCGA TTACATCGAA
TCCCGTCCGC TGATAGGGGG AGCGCATATC GCTGCTACCC TGATAGAGCT GGCGGAACAG
GTGCATCTCC CGGAGGACAT CATTAATCAC AAGAAACTGT CCAATCTGAC CCTGTTATGC
GGTCACCTGG GGTGTTGGGC CAATGACCTT TATTCGCTGG GAAAAGAGCT GGAACAGGGC
GATACGCACA ACCTGGTGCT GGTCATCCGG GAGGAACGGC AACTGGATAT AGAAGCTGCC
ATCAATGAAA CAGTCCGGCT GCATAACCAG GAAATGATCC AATTTGAGCG CATCTTCCAT
TCCTTGCCCA CATTTGACGA TAAAACAGAT GAGGAAGTGT ATAAGTATGC TTTTTGTCTG
GCGATGATCG TACGGGGAAA TATTGACTGG AGTCTGCAGG ATACAGCCAG GTATCAGCAG
CAGGTTTACG CGTAA
 
Protein sequence
MLYPTFSIPA LYCPFNSQIS PYASSVEAHT TQWVERFGLH EAIRGYREAK FAYMTSRFYP 
TAEYGRLCLA NDLLVLLFLM DDIFDNKDEE AQHPENLKKL LYACLGILKD GHRYTLEDWQ
NRQTPDKDIV HKSITQAMVA KGHMNILAAL TDVWQRVQAC TSLSYQQTFV QDMFKLFNAV
NWQNQNVNAD RIPSVADYIE SRPLIGGAHI AATLIELAEQ VHLPEDIINH KKLSNLTLLC
GHLGCWANDL YSLGKELEQG DTHNLVLVIR EERQLDIEAA INETVRLHNQ EMIQFERIFH
SLPTFDDKTD EEVYKYAFCL AMIVRGNIDW SLQDTARYQQ QVYA