Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1097 |
Symbol | |
ID | 8357211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1315207 |
End bp | 1318653 |
Gene Length | 3447 bp |
Protein Length | 1148 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644963251 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003120796 |
Protein GI | 256420143 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00128264 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGGAA ATTACTTTAG GTGTATAGGG GATCGTATTG CCCTGTTATT ACTGTTGCCA GCCATGGGGT ATGCTGCTTC AGATAAAGTA CACTACCACC CGCAGCAGGA GTTGTATGCT GCAACGGGAT TGAATCAGTC CAAGGGAAGA CAGACCTTAA AAGATATCCT TGTCTCATTG GAAACAAAGT ATAAGGTACG TATTAACTAT GTAGGTCAGT CGATTGGCAG TATCCAGACA GAGCCGCCTG CAGTCAAGGG TGCATCTGTG AAATTCATTC AGTACCTCAA TCAATTCCTG AAACCACTCG GACTGGAAGC AGAGGAATCT GGCGCTAACA TGTTTATCGT CTACAAACAG GAAGGTGCAG CACCTGCACC CAAGCCCGCA GCGCCTGTTG AAAAAAAAGC AACGCCGGAA CAGGAAAAAC CAGCCGCTAT CAATATATCC GGTCTCGTAA CGGATGATAC AGGCGTTCCT TTACCGGGCG TAACTGTTGT TGTGAAAGGT ACTTCAAACG GTGTGCATAC TTCTAATGAC GGTAAATATG AACTGAAGAA TGTGCCCGAA AATGCGCACA TCGTATTCAG CTTCATTGGT TTCAAAGCAC AGGAAATTGT GCTTAAAGGA CAACATAAAC TGGATGTACG TTTAAAGACA GATGTACAGG CCGTAAAAGA TGTGGTTGTA ACCGGGTACT ATGAGATCAA GAAAGAGAGT TTTACCGGTA TCGCAACGGT CCTTACTTCT GATGATATCA AAAAAGTAAA TCCGCAGAAC GTACTGAGCA GCTTGCAGGC ATATGACCCT TCATTTAAAC TGGTTGAAAA CAATCTGCTG GGCTCTAACC CCAACAGAAT TCCTAATATC AATGTTAGGG GTACGACCGC ATTGCCAAGT GCAGACGTAT CCAAACTGAC GAGAAACAGT ATGCTGACCG GTGTTACCAA TCAGCCTACT TTTATTCTCG ATGGTTATGA GGTGAATGTA CAGACTGTGT TTGACCTGGA TCCGAACAGG ATCGCATCTA TGACCCTGCT GAAAGATGCA GCAGCAACAG CGATCTATGG TTCAAGAGCG GCAAACGGTG TAGTAGTCAT TCGCACAAAG GCGCCAAAAG AAGGGAAGCT GGCTGTCAAC TATGGTTATG AGATGACGTT GAATGCACCT GATCTTTCTG ATTACCATGT ACTGAATGCA GGAGAGAAAC TGGAGTATGA ACGACTGGCA AAACTGTATG AATCAAATAA CGTAGATGCG CCGATCGATC TGGAGAAGGA ATATTATCAG AAAAAGAAAA ACGTACTCGC CGGCGTAAAT ACTTATTGGT TGTCTCAGCC ATTACAGGTA GATCTCGGAC ACAAACATTC CTTATATCTT GAAGGTGGTA CACCTGTTGT GAAATATGGA TTGGATATGC GTTACCAATC CAATAACGGT GTAATGAAAG GCTCTTACAG AAAACGTTAT GGTCTTGCAG CATCCCTGTC TTACAACGTG CAGAACAAGA TACAGTTCAG AAATCAGATG TCTATCACAC AGGTAGATGG AAGAGAATCT CCTTACAGAG AGTTTTCCAA CTACGTAAGA ATGAATCCTT ACTATCCAAA AACAGATTCA ACAGGCAGAC TGTTACGTGA AGTAGACAAA TGGAGTTATC GCGGTGGCGC TAATGGTGGT GCTGTTACAG ATCCAGTGCT GAATCCGATG TATGAAGCGA CTACGGGTAG TCTGGAGAAG AATCAATACG TAGAATTCAT GGATGCATTT TCAGGGGAAT GGACCATTAA TCCTGCATTA AGATTAAGAG GCCAGATATC CCTGACAAAG AGGAGATCTA CTGCAGATAA ATTTACCTCA CCATTCAGTA ATGAATATTA TAACGTAAGT GGTAATGATC TGAAAGACCG TGGTAAATAC ACGTTTGCTG ATGAAGATTT CTGGCAGGCA GATGGTAGTC TGACACTGAG TTATGCAAAA CAGATCAGGT CTAACTTCCT GAACGTATCA CTGGGTACGA ATATTCAGGA CAGAAGTAAT GACAGCAAGG CTTTTGCTGC ACAGGGTTTC TCTAATGACA GATTCTCACA GATTGAGTTT GCCCGTACTT ATGAAAAAGA TGGCTCTCCA AGTGGTGAGT ACACACAGGA CCGTCTGATC GGATCTTTTC TCTATGTAAA CTATTCCTAT AAAAATAAGT TCCTGATGGA CGGTACCGTA CGTCTGGACG GATCCTCCAA ATTTGGTACT GATTCCCGTA TGGCTACCTT CTGGTCCTAT GGTCTGGGAT GGAATGTACA CAACGAAAAA TTCATTCCAC GTAAGGTTAT TTCACAATTG ACGCTGAGGG CTACAACAGG TCTGACGGGT GATGTATCCT TCCCGTCTTA TTTATCTAAT ACCACTTACC AGTATTACAG CAACGACTGG TATTCCACAG GGGTAGGCGC GATTTTCAGA ACGTATGGTA ACTCTTCTCT GAGATGGCAG CGTACCAAAA ACTATGATGC CGGTATGGAA CTGGACCTTT TCAATGGTCG TTTCTATATT GCGCCGCGTT ATTACTATAA ACTCACCAAA GACCTGCTTG CAGATATTAT CGTACCACCA TCAACAGGTT TTACGGACTA TAAAGCCAAC CTGGGGGAAA TGGTGAATCG TGGTTTTGAG ATAAACGTCC GCAGTAACGT GCTGAGAGGT AAGAACTGGT CTTTCAACCT GTTTGCCAAC CTTGTGACAA ACAAAAACAA GATCACCAAG ATCTCCAATG CGCTGAAGAG CTACAATGAT AAAGTGGATG ATAAACAGGA GAGTGATCCT AATCTGAATT CTGTTCCGCT ACTGCGTTTC CAGGAAGGAC AGTCCCTTAA TACGATCTAT GCCGTAAGAT CAATGGGGAT AGATCCGGAA AATGGTAAAG AGATATTTGT GAAGAAAGAT GGAACCTATA CACATACCTA CAGTGTGAAA GACATGGTGC CTGTCGGCGA TATGACCACC AAACTGGAAG GTACATTCGG AGGCAGTCTG TATTATGGTA ACTGGGTCGC TGAAGTAAGA TTCTATACAA AAGGCGGTGG CGATCTGTAT AATCAGACAC TGGTGGACCG TGTAGAAAAT GCAGATCCAC GATACAATGT GGATAGTCGG GTGCTGCAAT CCAGGTGGAA ACAACCAGGA GATCATGCAC TGTTTAAAGA TATTGCAGAC CAGGGTTCTA CCCGTACTTC TTCCCGTTTT GTACAACGCG ATAACGTAGT GGAATTAAAG TCTGTTTATC TGGGATACAA TGTTCCGATG TCGGTGGCCA AGCGCTACAG GATGAATAAC CTGCGGTGTT CACTGAATTT GAATGATGTG TGGAGAACAT CCACTATAGA TGCAGAAAGA GGTATCGATT ATCCTTTTGC GAGAACATTC ACCTTCTCAT TATCTACTCA GTTCTAA
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Protein sequence | MPGNYFRCIG DRIALLLLLP AMGYAASDKV HYHPQQELYA ATGLNQSKGR QTLKDILVSL ETKYKVRINY VGQSIGSIQT EPPAVKGASV KFIQYLNQFL KPLGLEAEES GANMFIVYKQ EGAAPAPKPA APVEKKATPE QEKPAAINIS GLVTDDTGVP LPGVTVVVKG TSNGVHTSND GKYELKNVPE NAHIVFSFIG FKAQEIVLKG QHKLDVRLKT DVQAVKDVVV TGYYEIKKES FTGIATVLTS DDIKKVNPQN VLSSLQAYDP SFKLVENNLL GSNPNRIPNI NVRGTTALPS ADVSKLTRNS MLTGVTNQPT FILDGYEVNV QTVFDLDPNR IASMTLLKDA AATAIYGSRA ANGVVVIRTK APKEGKLAVN YGYEMTLNAP DLSDYHVLNA GEKLEYERLA KLYESNNVDA PIDLEKEYYQ KKKNVLAGVN TYWLSQPLQV DLGHKHSLYL EGGTPVVKYG LDMRYQSNNG VMKGSYRKRY GLAASLSYNV QNKIQFRNQM SITQVDGRES PYREFSNYVR MNPYYPKTDS TGRLLREVDK WSYRGGANGG AVTDPVLNPM YEATTGSLEK NQYVEFMDAF SGEWTINPAL RLRGQISLTK RRSTADKFTS PFSNEYYNVS GNDLKDRGKY TFADEDFWQA DGSLTLSYAK QIRSNFLNVS LGTNIQDRSN DSKAFAAQGF SNDRFSQIEF ARTYEKDGSP SGEYTQDRLI GSFLYVNYSY KNKFLMDGTV RLDGSSKFGT DSRMATFWSY GLGWNVHNEK FIPRKVISQL TLRATTGLTG DVSFPSYLSN TTYQYYSNDW YSTGVGAIFR TYGNSSLRWQ RTKNYDAGME LDLFNGRFYI APRYYYKLTK DLLADIIVPP STGFTDYKAN LGEMVNRGFE INVRSNVLRG KNWSFNLFAN LVTNKNKITK ISNALKSYND KVDDKQESDP NLNSVPLLRF QEGQSLNTIY AVRSMGIDPE NGKEIFVKKD GTYTHTYSVK DMVPVGDMTT KLEGTFGGSL YYGNWVAEVR FYTKGGGDLY NQTLVDRVEN ADPRYNVDSR VLQSRWKQPG DHALFKDIAD QGSTRTSSRF VQRDNVVELK SVYLGYNVPM SVAKRYRMNN LRCSLNLNDV WRTSTIDAER GIDYPFARTF TFSLSTQF
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