Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0962 |
Symbol | |
ID | 8357076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1153285 |
End bp | 1154679 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644963116 |
Product | outer membrane efflux protein |
Protein accession | YP_003120661 |
Protein GI | 256420008 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000066626 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.118679 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTATCAT CACAATTATT ATATTTTTGG AATGTCATGA AAATATCCAA AATCCCGGGA TGTCTCCTGG CGCTGTGCAT TTTGTTTGCT AACTCTGCGG CCCTGAAGGC GCAGGATACC TGGACACTGC AACGCTCTGT AGATTATGCG CTTCAGAACA ATATATCTAT CAAGCAGCAG GACGTACAGA AACGTTATGC AGCGTTGACA CTCAGACAAA ACCAGCTATC GCAGCTCCCC ACCCTTGGCG CTGCTGTACA GGCCCAATTG GGTTCTGGTC GTAATATTGA CCCGTATACG AACGTGTATG TTACGCAATC TTATTTTAAC CTTGGTGGAG GTGCGAATAC CAATGTTGAT ATCTTCAACT GGTTTGCAAA ACGTAATATA ATTGCTGCCA ATAAATATGA GTTGCAGGCG CAGGATCGTT TCCTGGAAAA GGCAAGGAAT GATGTTGCTT TTAACATTGC CAGTACCTTT CTGCAATTAC TCATGAATAT TGAGCAGGTG CATGTCAGCG AGTTACAGGT AAAACTGACT ACTTCTCAGC TGGATAATAC CAAGAAACTG GTTATTGCGG GTTCTGTTCC GGAGAGCAAT CAGGCTGACC TGGAAACCAA ACTGGCGAGT GATAGTGTAA CCCTGATCAC GGCACAGAAC AATGTGATCA TGTCTACTTT GCAGATGAAG GCGTATCTCA ACCTGAGCTT TGATCAGTCA TATGTACCAC AGATTCCGGA GAATATTTCA GAATTGAAAG TACCGAGACT GGATGAAGTA GATCCCGAGA TGGTATATAG TTCTTCCCAG ATGACCAACC CGCTGATAAA GGGGCATGAC CTGAGAATAA AATCCCTGCA ACGCGCCTAT GCGGCACAGA AAGGGTATTT GTATCCCAGT TTATCTGCCA ATGGCGCATT GAATACGAGT TACACCGATG TGGCGAAAGA TGGGGCAACA GGTAAGACAA TCGCTTTTAA CCAGCAGGTA AATAATAACT TCCGTCAGTC CGCAGGCCTG ACCCTGAATA TTCCGATCCT GAATGGCTGG CAACAGCGTA CAGCGGTACA GCGGGCGAAA CTGGATATTA CCAATCAGCA GCTGACCAAA GACCAGGATC TGCAAACACT GCGTCAGGAT ATTTATACTG CCCATGCCAA TGCGGTAGCC GCGATTCAGA AATTCTCCGC ATCCAGTAAG GGTGTTGATG CTTCCCAGCG TGCGTATGAT TTTGCGACCA AACGGTATAA CCTGGGTTTA ATGAATACTA TTGACTATAT TACTACGCAA ACTAACCTGT TTAAAGCGCA GATCGATAAA GTATCGGCGC AATACGAGTT CATATTTAGA ATGAAACTAC TGGAGTTTTA TAGGGATCAA AAGATCTCCC TGTAG
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Protein sequence | MLSSQLLYFW NVMKISKIPG CLLALCILFA NSAALKAQDT WTLQRSVDYA LQNNISIKQQ DVQKRYAALT LRQNQLSQLP TLGAAVQAQL GSGRNIDPYT NVYVTQSYFN LGGGANTNVD IFNWFAKRNI IAANKYELQA QDRFLEKARN DVAFNIASTF LQLLMNIEQV HVSELQVKLT TSQLDNTKKL VIAGSVPESN QADLETKLAS DSVTLITAQN NVIMSTLQMK AYLNLSFDQS YVPQIPENIS ELKVPRLDEV DPEMVYSSSQ MTNPLIKGHD LRIKSLQRAY AAQKGYLYPS LSANGALNTS YTDVAKDGAT GKTIAFNQQV NNNFRQSAGL TLNIPILNGW QQRTAVQRAK LDITNQQLTK DQDLQTLRQD IYTAHANAVA AIQKFSASSK GVDASQRAYD FATKRYNLGL MNTIDYITTQ TNLFKAQIDK VSAQYEFIFR MKLLEFYRDQ KISL
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