Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5341 |
Symbol | |
ID | 8336695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6156503 |
End bp | 6157117 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644958439 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003116041 |
Protein GI | 256394477 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.087744 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.833644 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGTAC AGGCGCGCGA GCGGTTGTTG ACGGCGTCCG AAGAGCTGTT CTATGCCGAG GGAATCCGCG CGGTGGGCGT GGAGCGGATC CTGACGGCCT CGGGAGTGGG GCGCGCCTCG TTCTACCGGC ACTTCGCCGG CAAGGACGAA CTGGTGGTCG CCGTCCTGAC CCGCACCGAC GAACGCTGGC GCGAATGGCT GCGCGAAACC GTCACCGGAT ACGGACTGCC GCCCGCCGAA CGCCCGATCG CGGTGTTCGA CGCCCTGGGG GAGTGGCTCG ACGGCGCGGG CCACCGCGGC TGCGCCTTCA TCAACGCCAT GGTCGAGGCC GCCGACCGCA CCAGCCCGAT CCACGAAGCC GCCGCCGCGC ACAAGGAAGC GGTGACCGAC TACCTCGCCC GCCTCCTGGC CGAAGCAGGC CGCGACGACC ACGAAACCCT CGCCCCGGAA CTGATGCTCC TCATCGAGGG CGCCCTGGTC ACCTCCCAGC GCGAGGGCAC CTCGGAGGCG GCGATCCGCG CCGGCCGCAT CGCCCGCGTG CTGCTCGCGC GCCAGCCGGA CCCGCGCGAC GCGGTGCGGC GGCGGCTGCG GGTGGTGACC GGCGGGATGC GATAA
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Protein sequence | MAVQARERLL TASEELFYAE GIRAVGVERI LTASGVGRAS FYRHFAGKDE LVVAVLTRTD ERWREWLRET VTGYGLPPAE RPIAVFDALG EWLDGAGHRG CAFINAMVEA ADRTSPIHEA AAAHKEAVTD YLARLLAEAG RDDHETLAPE LMLLIEGALV TSQREGTSEA AIRAGRIARV LLARQPDPRD AVRRRLRVVT GGMR
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