Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5021 |
Symbol | |
ID | 8336375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 5751771 |
End bp | 5752448 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644958120 |
Product | peptide deformylase |
Protein accession | YP_003115722 |
Protein GI | 256394158 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.106509 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCGCGC GCCCTGGCTC CACCGCGAAG CAGGTCCTGG TGCAGGGCCG GCCGGTGGAC GGCTACCCCG CCCTGGCTCC TGAGGCGGCT CGCGGCAAAG AGCTCAGGGT GACCGTGGTG GGCGAAGAGG TCCTGCACCG GCCGTGCCGT GAGGTGGCCG AGTTCGGGAC GGCGGAACTG CTCCAGCTCG TGGACGACAT GTTCTTGACC ATGTACGTCG CGCAGGGCGT CGGCCTGGCG GCCAACCAGG TCGGCGTGGA CCTGCGGGTG TTCGTCTACG ACTGCGTCGA CGACGACGGC GCGCGCCACG TCGGGCACAT CGTGAACCCC AAGCTGGACC GCACGCCCGA GGGCGGGCAG CGCCGGCTGG TCGAGGCGCA GGAAGGCTGC CTGTCCGTCC CCGGCCCGAC CCGGGAGCTG CCCCGCTACG ACCACGCCGT CCTGCACGGC GTGGACGTCC ACGGCGAACC CCTGGTCCTC GAAGGCGAGG GATACTTCGC CCGGTGCCTC CAGCACGAGA CCGACCACCT CGAGGGCACC CTGTACATCG ACCGGATGAA CAAGAAGACG CGGCGCGGCG TGCTGGAGGA GATGGCCGAG GTCGCCGACG GTGTCTTCGC CGAACGCAAG ACCCGCGCCG AGGAACTGCG CGAGCACTTC GCAACCCCGA GCGAGTGA
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Protein sequence | MVARPGSTAK QVLVQGRPVD GYPALAPEAA RGKELRVTVV GEEVLHRPCR EVAEFGTAEL LQLVDDMFLT MYVAQGVGLA ANQVGVDLRV FVYDCVDDDG ARHVGHIVNP KLDRTPEGGQ RRLVEAQEGC LSVPGPTREL PRYDHAVLHG VDVHGEPLVL EGEGYFARCL QHETDHLEGT LYIDRMNKKT RRGVLEEMAE VADGVFAERK TRAEELREHF ATPSE
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