| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4962 |
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| Symbol | |
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| ID | 8336316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 5670416 |
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| End bp | 5672752 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644958061 |
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| Product | glycoside hydrolase family 10 |
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| Protein accession | YP_003115663 |
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| Protein GI | 256394099 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.59486 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCG ACACCGGCGC ACCCCACCGC GCCAATCCGC CGAGACCGGG CCGAGCGGGC
TCGCCCGACC GCCGCGGACT GCGCGGAGCC CTGGCCGTGG TCACCGTGGC CGCGATCACC
GCCGCGGCGG GCGCGCTCCT GCTCGGCGGT CAGGCCTCCG CCGCTCCCAC GACGCTGCGC
GCCGGCGCCG AGGCGGACAG CCGCTACTTC GGCGTCGCCG TCGGCCAGCA GGACCTGGGC
AACGGCACGG CGAGCAACGT GGCCGGCTCG CAGTTCGACA TGGTGACGCC CCAGAACGAG
ATGAAGTGGG ACACCGTCGA GCCCAACAAC GGGCAGTTCA ACTTCAGTCC GGGCGACGCG
ATCGTGAACT TCGCGACCTC GCACAACGAG CGCGTGCGCG GACACAACCT GGTGTGGCAC
TCCCAGCTGC CCGGCTGGAT GAGCAGCCTG TCGGGCTCCC AGGCGAAGTC GGCCATGGAA
GCGCACATCA CCGGCGAGGT CTCGCACTTC AAGGGCAAGA TCTACGCCTG GGACGTCGTG
AACGAGCCCT TCAACGACGA CGGCAGCTTC CGTCAGGACG TGTTCTACAA CGCCTTCGGC
GGCGGCGCGC AGTACATCGG CGACGCCATC CGCACCGCGC ACGCCGCCGA CCCGGCCGCC
AAGCTGTACA TCAACGACTA CAACATCGAA GGCCAGGGCG CCAAGAGCGA CGCCATGTAC
AACCTGGCCA AGACGCTGGT GGCGCAGGGC GTGCCGTTGG GCGGGATCGG GTTCGAGAGC
CACTTCATCG TCGGGCAGGT CCCCTCCAGT CTGCAGGCGA ACATGCAGCG CTTCGCAGCC
CTCGGCCTGG ACGTGGCGAT CACCGAGCTG GACGACCGCA TGCCGACCCC GGCCAGCAGC
GGCAACCTGC AACAGCAGGC CACTGACGAC GCGAACATCG TGAAGGCCTG CCTGGCGATC
GCGCAGTGCC CGGGCATCAC GCAGTGGAAC ATCAGCGACG CCGACTCCTG GATCCCCGGC
ACGTTCCCCG GCTACGGCGC GGCGACGCTG TTCGACAACA ACTACCAGCC CAAGTCGGCG
TTCAACTCGG TCATGACCGC GCTGAGCAGC GGATCCGTCC CGCCGACGTC GCCGACGTCG
GGCTCCTCCT CACCGCCGTC GACGTACGCG AACCTGGCAG CGTCGTTCGA CAACGTCGGG
ATCAGCGCGG ACGGCAACAC CGCGGCGGGC AACCTGGACG GCGGCGGCTC CAGCTTCTCC
CAGACCGCGC TGACCAATGC CCATGCCGGT CCCGGCGCGC AGGTCACCTC CTCCGGGGTG
ACCTTCACGA TGCCCGCGGC CGCCGCCGGC AGCAACGACA ACACCGTGCC GCAGAACCAG
ATCATCACCA TGTCCGGCAC GGGCACCCTG GGCTTCCTGC TCACCTCCAG CTACGGACCC
GCCACCGGCA CCGGGACCAT CACCTACACC GACGGCAGCA CCCAGAGCTA CACGCTCAGC
TCCGCCGACT GGTGGGCCAC CACGCCGGCC GGCGGCAGCG CGCTCGCGGT CAGCTCGACG
TACCAGAACC GCCCGGGCAA CACCACCGCC ACCCAGAGCG GCAACATCTT CTCCCAAGCC
GTGACCCTGA CAGCGGGCAA GACCCTCGCC TCGGTCCAGC TCCCCGCGGG AAGCCCCGTC
GCCTCCGGCA CTCCCGCCCT GCACATCTTC GCCATCTCCA CCACCGCCGG CACCTCCGGA
GGCAACACGG TCACCGTCAC CGGACCGGGC AACCAGTCCG GCACCGTCGG CACGGCCATC
AGCGCCGTCC AGATCCAGGC CACCGACTCC GGTACCGCGC AGACCCTGAC CTACACCGCC
ACCGGACTCC CGGCCGGCCT GTCGATCAGC AGCACCGGCC TGATCACCGG CACCCCGACC
ACCGCCGGCA GCTCGACCAC GACCATCACC GCCACCGACG CCACCGGAGC CGCCGGCTCA
GCCACCTTCA CCTGGACCGT CACCGGCGGC GGCACCACCA CCGGCGTCTG CCACGTCACC
TACGCCAAGA CCGCCGAGTG GGCCGGCGGA TTCACCGCCA ACGTCACCAT CGCCAACACC
GGCACCGCCG CGATCAACGG CTGGACCCTC GCCTTCACCT TCCCCGGCGA CCAAAAGATC
ACCAACGCCT GGAACGGCGC CACCAGCCAG TCCGGCGAAG CCGTCACCGC GACCAGCGCC
GCCTACAACG CCTCCATCGC CCCCGGCGCC ACCACATCGT TCGGCTTCCA GGGCACCTTC
ACCTCCAACG ACACCGCCCC GACGACCTTC ACGGTCAACG GAGCCGCGTG CTCCTGA
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| Protein sequence | MDIDTGAPHR ANPPRPGRAG SPDRRGLRGA LAVVTVAAIT AAAGALLLGG QASAAPTTLR
AGAEADSRYF GVAVGQQDLG NGTASNVAGS QFDMVTPQNE MKWDTVEPNN GQFNFSPGDA
IVNFATSHNE RVRGHNLVWH SQLPGWMSSL SGSQAKSAME AHITGEVSHF KGKIYAWDVV
NEPFNDDGSF RQDVFYNAFG GGAQYIGDAI RTAHAADPAA KLYINDYNIE GQGAKSDAMY
NLAKTLVAQG VPLGGIGFES HFIVGQVPSS LQANMQRFAA LGLDVAITEL DDRMPTPASS
GNLQQQATDD ANIVKACLAI AQCPGITQWN ISDADSWIPG TFPGYGAATL FDNNYQPKSA
FNSVMTALSS GSVPPTSPTS GSSSPPSTYA NLAASFDNVG ISADGNTAAG NLDGGGSSFS
QTALTNAHAG PGAQVTSSGV TFTMPAAAAG SNDNTVPQNQ IITMSGTGTL GFLLTSSYGP
ATGTGTITYT DGSTQSYTLS SADWWATTPA GGSALAVSST YQNRPGNTTA TQSGNIFSQA
VTLTAGKTLA SVQLPAGSPV ASGTPALHIF AISTTAGTSG GNTVTVTGPG NQSGTVGTAI
SAVQIQATDS GTAQTLTYTA TGLPAGLSIS STGLITGTPT TAGSSTTTIT ATDATGAAGS
ATFTWTVTGG GTTTGVCHVT YAKTAEWAGG FTANVTIANT GTAAINGWTL AFTFPGDQKI
TNAWNGATSQ SGEAVTATSA AYNASIAPGA TTSFGFQGTF TSNDTAPTTF TVNGAACS
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