| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0212 |
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| Symbol | |
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| ID | 8331538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 229173 |
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| End bp | 230783 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644953380 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_003111008 |
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| Protein GI | 256389444 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA GCCCGCGACT CCCCAAAGGG GTCTGGATAA ACACCTCGCT CGCCGTGGTG
GTAGCCGCCG GCGGAGCGGG CGCCTGGGCG CTGCTCGGCT CGTCGAGTTC CGACAAGACC
GCCGCCAACG GCCGCACCAT CGCGGTGCAG CGGGGCAACG TCACCGCCCA GGTCTCGGCC
TCCGGCAACG TGACCCTGCC GACGGAGCAG GACCTCGCGT TCACCGCGTC GGGCACGGTG
ACCGAGGTCG ACGTGAAGCC CGGCGACGTG GTGAAGGCCG GCCAGGTGCT GGCGAAAATC
GACACCACCG AGGCGAACCA GCAGCTGACC TCCGCCCAGG CCCAGTTGAC CACCGCGCAA
GCGCAGCTGA CCAAACTGCA ACAGGGCCAG ACGCCGCAAC AGGCGGCCCT GAGCCGGCAG
CAGCTGACGA ACGCCGCGGA CTCGCTGTCG TCGGCGAAGA CCTCGTACTC CGACGCGCGG
AACAGCATCT CGCTGGACGA GAGCAATCTG GCCGCCGCGG TCACCACGGC GAAGAACAAC
CTCGCCGCCG ACGAGGCCGC GGCGAAACCG GACGCCGCGA AGATCGCGCA GGACACCAAC
GCCGTCACCC AGGCCGAGAA CGCTCAGAAG AACGGCTCGC TGAAGGACAC GCAGTCCCTG
CACCAAGCGC AGAACTCACT GACGTCGGCG CAGAACTCCT ACGCCATCGC CGTGGACCAG
CAGGCGGTCT CCGCCGCGCC GGCCACCCCG GACCAGATCG CCTCGGCCAA CCAGTCCGTG
CTCAACGCCC AGAACGCGGT CACCACCGCG CAGAAGGGCG TCGCCGGCAC CGTCATCACC
GCGCCGCAGG CCGGGACGGT CCTGTCGGTC GGCGGTTTGG TCGGCGACTC GGTGAGCGCC
GGATCCGCGT CCTCCACCTC GGCGGCGTCC TCGTCCTCCG GCGGTTCTAC TGGGGGTTCC
TCTGGGGGTT CGGCAAGCGG CTCCTCGGGA TCGTCCAGCT CCTCGACGTC CTCCACCGCT
GCCAAGTCCG GCAGCAGTTT CGTGGTGCTG GGCAACATGT CCAGCCTGAC GGTGCGCGCC
GAGTTCGCCG AGACCGACGC CGCCAAGCTC AAGCCCGGGG AGAGCGCGCA GGTCACGATC
AACGCGATCC CGGGCTCGGC GCTCACCGCG ACCGTGCAGT CCGTCGACCC GACCTCGACC
GTGGTGTCCA ACGTCGTCGA GTACGGCGTC ACGCTCCAGT TCACCGCCGG GCAGCAGGAT
CTGGCCTCGC TCAAGCCCGG ACAGACCGCG TCGGTCTCGG TCACCACCGA TAGCGTGACC
AACGTGCTCT ACGTGCCGTC CTCTTCGGTC ACCACGCTGG CCGGCCAGAG CTTCGTCACC
ATCGTCAGCG GCAAGACCCA GACGCAGACG CCGGTCCAGA TCGGCGTGGT CGGCGACACC
TCGACGGAGA TCACCTCCGG GGTGAGCGAG GGCGACGAGG TGCTGCTGTC CTCGCGCACC
ACCACCGGCA CCGGCACCAC CACCCGGGGC GGCGGCGCGG GTGGCTTCGG CGGCGGCGCG
GGCGGGTTCG GCGGCGGCGC CGCCGGCGGC CGGGGCGGAT TCGGCGGGTG A
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| Protein sequence | MTDSPRLPKG VWINTSLAVV VAAGGAGAWA LLGSSSSDKT AANGRTIAVQ RGNVTAQVSA
SGNVTLPTEQ DLAFTASGTV TEVDVKPGDV VKAGQVLAKI DTTEANQQLT SAQAQLTTAQ
AQLTKLQQGQ TPQQAALSRQ QLTNAADSLS SAKTSYSDAR NSISLDESNL AAAVTTAKNN
LAADEAAAKP DAAKIAQDTN AVTQAENAQK NGSLKDTQSL HQAQNSLTSA QNSYAIAVDQ
QAVSAAPATP DQIASANQSV LNAQNAVTTA QKGVAGTVIT APQAGTVLSV GGLVGDSVSA
GSASSTSAAS SSSGGSTGGS SGGSASGSSG SSSSSTSSTA AKSGSSFVVL GNMSSLTVRA
EFAETDAAKL KPGESAQVTI NAIPGSALTA TVQSVDPTST VVSNVVEYGV TLQFTAGQQD
LASLKPGQTA SVSVTTDSVT NVLYVPSSSV TTLAGQSFVT IVSGKTQTQT PVQIGVVGDT
STEITSGVSE GDEVLLSSRT TTGTGTTTRG GGAGGFGGGA GGFGGGAAGG RGGFGG
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