Gene Afer_0578 details

Gene Information

• Locus tag: Afer_0578
• ID: 8322637
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 583734
• End bp: 585563
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644951716
• Product: GTP-binding protein TypA
• Protein accession: YP_003109205
• Protein GI: 256371381
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0310674
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAGCTTC GCAACGTGGC GATCATCGCC CACGTCGACC ATGGCAAGAC GACCCTCGTC 
GACGCCCTCT TGCGCCAGGC GGGAGCGTTC CGCGAGGGCG CCGAGACCGA GGAGCGCATC 
CTCGACTCCA TGGATCTCGA GCGCGAGCGG GGGATCACCA TCTTGTCGAA GGCGACCGCG 
ATCCCGTTCG GCGACGTCAT CGTCAACCTC GTCGACACGC CCGGTCACGC GGACTTCGGT 
GGTGAGGTCG AGCGAGCGCT CTACCTGGCC GACGGCGCGG TCCTGTTGGT CGACGCCGCG 
GAGGGCCCGC TCCCGCAGAC CCGCTTCGTC CTGGCCAAGG CCATCGAGCG CGGCCTCGCG 
CTCGTCGTCG TGATCAACAA GGTCGACCGG CAGGATGCGC GCCCGCACGA GGTGCTCGAC 
GAGGTGCTCG AACTGTTGCT CGAGCTCGGT GGTCCCGACG TGGATCTCGA CGTCCCGGTG 
GTCTACGCCT CGGGACGCGC GGGGCGGGCC GACCTCGAGT TGCCCATGCG GAGCGAGGAC 
CTCACGCCGC TCATCGAGAC GATCCTCAAG CACGTGCCGG CTCCCGATGC CGATCCCGAC 
GGCCCGCTGC GCGCCCAGGT GCTCAACCTC GACGCCTCGA CCTATCTCGG CAGACTCGCC 
CTCGTTCGCG TGCACGCCGG TCGACTGCGC CGGGGCCAAA GCGTGGCTCG GGTCGGCGTC 
GACGGGCGCG TGAGCACTTT GCGCCTCGGC GAGCTGTTCC GGATGCACTT CCTCGAGCGC 
GTGCCCACCG ACGAGGTCAT CGCGGGCGAC ATCGCCATCG TCGCAGGTGT CGAGGACATC 
GGCATCGGCG AGTCGCTGTG CGACCCCAAC GATCCGGAGC CGCTCGCGCC GGTGCACGTC 
GACGAGCCGG CGATCGCCAT GACGTTCAGC GTGAACACCT CGCCGCTCGC CGGACGGGAG 
GGCACCAAGC TCACGGCGCG CCTCTTGGCG CAGCGCTTGG CACAGGAGAT CGTGGGCAAC 
GTCTCGATCC AGGTTCGCCA GACGGAGCGC AGTGATGCGT TCGAGGTCCA GGGCCGGGGG 
GAGCTCGCGC TCGGGGTCTT GATCGAGCTG ATGCGGCGTG AGGGCTTCGA GCTCACCATC 
TCGAAGCCCC GCGTCCTCAC GAAGCTGGTC GACGGCGAAG TGTACGAACC CTACGAGCGC 
CTCGAGGTCG AGGTGCCAGA GGATCTCTTC GGAGCGCTCA CGCAGGTCCT CTCACCGCGA 
AGGGCCGAAC TCGTGACGCT GGAGCACTCC CAGAGCGGCT GGGTGCACAC GGTCTATTGG 
ATCCCGGCCA GAGGCTTGCT CGGCGCGCGA GGCGAGCTGC TCACGCAGAC ACGCGGCCAA 
GCGGTCATCC ATCACTCCGC CGATGGCTAC GGACCGTGGG TCGGCCCGAT CCGCCCCCGG 
GTCGCGGGGA GCCTCGTCGC CGACCGGGCT GGTGTGGCCA CGACGTACGC GTTGCTGTCG 
TTGCAGGACC GTGGCACGCT GTTCATCGGC CCGGGTGACG AGGTCTACGA GGGCATGGTC 
ATCGGGCTCA ACGCGCGTCC AGGTGACATG GACGTGAATC CGACCAAGGA GCGCAAGGTG 
ACGAACATGC GCTCGTCGAC CGCCGAGGAA CTCGTCCGTC TGACCCCGCC ACGACGCTTG 
ACGCTCGATA GTGCCTTGGA GCTCATCGGC GACGACGAGT GCGTCGAGGT GACGCCGAAG 
GCGGTGCGAG TGCGCAAGGT CCAGCTCGTC GGGAGGGAGC GCGCCAAGGC GCGCCGATCA 
GGCGAGATCG GGGGGACGGA GGCGTCGTAG 

 

Protein sequence

MQLRNVAIIA HVDHGKTTLV DALLRQAGAF REGAETEERI LDSMDLERER GITILSKATA 
IPFGDVIVNL VDTPGHADFG GEVERALYLA DGAVLLVDAA EGPLPQTRFV LAKAIERGLA 
LVVVINKVDR QDARPHEVLD EVLELLLELG GPDVDLDVPV VYASGRAGRA DLELPMRSED 
LTPLIETILK HVPAPDADPD GPLRAQVLNL DASTYLGRLA LVRVHAGRLR RGQSVARVGV 
DGRVSTLRLG ELFRMHFLER VPTDEVIAGD IAIVAGVEDI GIGESLCDPN DPEPLAPVHV 
DEPAIAMTFS VNTSPLAGRE GTKLTARLLA QRLAQEIVGN VSIQVRQTER SDAFEVQGRG 
ELALGVLIEL MRREGFELTI SKPRVLTKLV DGEVYEPYER LEVEVPEDLF GALTQVLSPR 
RAELVTLEHS QSGWVHTVYW IPARGLLGAR GELLTQTRGQ AVIHHSADGY GPWVGPIRPR 
VAGSLVADRA GVATTYALLS LQDRGTLFIG PGDEVYEGMV IGLNARPGDM DVNPTKERKV 
TNMRSSTAEE LVRLTPPRRL TLDSALELIG DDECVEVTPK AVRVRKVQLV GRERAKARRS 
GEIGGTEAS