| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0307 |
|---|
| Symbol | valS |
|---|
| ID | 8322362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 318455 |
|---|
| End bp | 321022 |
|---|
| Gene Length | 2568 bp |
|---|
| Protein Length | 855 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644951455 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_003108948 |
|---|
| Protein GI | 256371124 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGGATCC CGGACAAGGT CGAGCTCGAG GGGCTCGAGC GCAAGTGGGG CGCGTTCTGG
GAGGAGCACG GGCTATATCG CTTCGACGAC ACAGCTCCCG CCGCGCAGGT CTACGCCATC
GACACACCGC CTCCGACCGT CTCCGGGACG CTGCACATCG GTCATGTGTT CTCCTACACC
CATGCCGACA TCATCGCCCG CTACCAGCGG ATGCAGGGCA AGGAGGTGTT CTACCCGATC
GGATGGGACG ACAACGGCGT CCCGACCGAG CGGCGAGTGC AGAACTACTA TGGCGTGCGG
TGCGACCCGT CGTTGCCCTA TCGCGGGACC GACGAAGAGC TGCCTCGGGA AGGGGCACGG
CAGGTCCCGG TGTCGAGGCG ACGCTTCATC GAGTTGTGCA CCGAGCTCAC GGCGAAGGAC
GAGCAGGCGT TCGAGCAGCT GTGGCGTGCG ATCGGGTTGT CGGTGGACTG GTCGCTCGTC
TACACCACGG TCGGTGAGCG TGCCCGTCGC GTGTCACAGG CGGACTTCCT CGATCTCCTC
GAGCGGGACC AGGCCTACCT CGCCGAGGCC CCGACGCTGT GGGACGTCGA TTTCCAGACC
ACGGTCTCCC AAGCCGAGCT GGAGGATCGC ACCGTCGAGG GTCGCTACCA CCGCATCGTC
TTCGACCTTG AGGGTGGTGG CGAACTCGAG ATCATGAGTT CACGGCCCGA GCTGATCCCC
GCCTGCGTCG CGATCGTCGT GCATCCCGAA GACGATCGTT ACCGCGAGGT GGTCGGGCGC
CGCGCCATCA CCCCGCTGTT TCGCGTGCCA GTACCGGTGA TCGCGCACCC GCTCGCCGAG
CCGGAGCGCG GGACCGGTGC GGCCATGGTC TGTACGTTCG GGGACCTCAC CGACGTCGTG
TGGTGGCGCG AGGCATCCCT GCCGACCCGG GTCGTGATCG ACCGGGCCGG CCGACTGGTG
CCACGCGTGG ACTTCGCCGC CTTCGGTTCC CTCGATCCCG ATGGCGCGGC TGACGCCTAC
GGACGCCTCG CGGGCTTGCG TGCGAGCGAC GCACGTGCCG AGGTCGCGGA GGCGCTCGCG
GCCGCGGGGG TGCTTCGTGG GATCGAGCAG GTCCGTCACG CCGTGAAGTA CTACGAGAAG
GGGGAGCATC CGCTCGAGGT CCTTGCAACC CGTCAATGGT TCATCCGCGT CCTCCCGCTG
CGCGATCGTC TGCTCGAGCG CGCGGCCGAG CTCGACTGGT TGCCACCACA CATGCAGGTT
CGCCTCGAGG ACTGGATCCG CGGACTCAAC CAGGATTGGA ACGTCTCGAG GCAGCGCTTC
TTCGGCATCC CGATTCCTCT GTGGTATCCG GTGCGCGAGG ACGGCTCGGT GGACTACGAC
CATCCCCTGC GGCCTGCGAA GGAGGACCTG CCGGTCGATC CGCAGAGCGA GGCTCCCCGC
GGCTACGCCG ACGAGCAGCG AGGTGTACCG GGTGGCTTCG TCGGCGACCC CGACGTGCTC
GACACCTGGG CCACGTCGTC GTTGACCCCA CAGCTCGCGG GGGGCTGGGG TGAGCGTCCA
GACCTCTTTG CCAAGGTCTT CCCGATGGAA CTGCGGCCCC AGGGCCAAGA GATCATCCGA
ACGTGGCTGT TCTACACGGT CGTGCGAGCG GAGCTGGCCT TCGGTCGGCT CCCGTGGCGG
CGGGCGTTGA TCTCGGGCTG GGTGCTCGAC CCCGATCGCA AGAAGATGTC GAAGTCCAAG
GGCAACGTCG TCACACCCAT GCCGCTCGTC GAGCGCTTCG GCGCGGACGC CGTGCGCCAC
TGGGCGGCGA ACGGTCGGCC CGGGACCGAT ACCGCGGCCG ACGAGGCGCA GATGCGCGTC
GGTCGTCGTC TCGCCATCAA GGTCGCCAAC GCCAGTCGCT TCGCGCTCAG CCGTGTGGCG
AGCCGCTCCA GCCACAAGCC CGCGTGGGTG CCGATCGACG CAGCGGAACT CGAGGCCCTC
GACGCCACGA TCGCACGGGC CACCGAGTTG CTCGAGGCGC ACGACTACAC GAGCGCGCTC
GCGGCCATCG AGGAGCACTT CTGGGCCTTC TGCGATGATT ACCTGGAACT CGTGAAGGTG
CGCGCCTACG GCGACGACTC GCCGGAGCAC GCCTCCGCGC TGGCTGCGCT CGAGATCGGC
GTCGAGCTGT TCATCCGGGC GTTCGCACCG TACCTCCCCT TCGTCACCGA AGAGGTGTGG
TCCTGGTTCC GCGAGGGATC GGTGCACCGA AGTGCCTGGC CGCAGCCGGG CGAGGCCATG
CGCCGCTACG TCGAGCTCGT CGGTGAAGGC CATGGCGTCG TCGACCCGGC CGTTCGGGCG
GCGGTGTCGT GGTCGCTCGC CCAGGTGCGG CGGGCGAAGA CGTCGGAGCA GCGCTCGCTG
CGTACGCCGG TCGAACGCCT CGTCGTGTGG GCGCCCCGGG CGTGGCTGGA GGCACTCGCC
GCTGCCGAGG ATGACCTCAG GGCGGCCGGC GGCGTGCTCG CGCTCGAGCG CCACGAGGCC
GACGAGCCCC GTGCCGTGGT CGAGCTCGCT CCGCCAGAGC AGCACTGA
|
|---|
| Protein sequence | MRIPDKVELE GLERKWGAFW EEHGLYRFDD TAPAAQVYAI DTPPPTVSGT LHIGHVFSYT
HADIIARYQR MQGKEVFYPI GWDDNGVPTE RRVQNYYGVR CDPSLPYRGT DEELPREGAR
QVPVSRRRFI ELCTELTAKD EQAFEQLWRA IGLSVDWSLV YTTVGERARR VSQADFLDLL
ERDQAYLAEA PTLWDVDFQT TVSQAELEDR TVEGRYHRIV FDLEGGGELE IMSSRPELIP
ACVAIVVHPE DDRYREVVGR RAITPLFRVP VPVIAHPLAE PERGTGAAMV CTFGDLTDVV
WWREASLPTR VVIDRAGRLV PRVDFAAFGS LDPDGAADAY GRLAGLRASD ARAEVAEALA
AAGVLRGIEQ VRHAVKYYEK GEHPLEVLAT RQWFIRVLPL RDRLLERAAE LDWLPPHMQV
RLEDWIRGLN QDWNVSRQRF FGIPIPLWYP VREDGSVDYD HPLRPAKEDL PVDPQSEAPR
GYADEQRGVP GGFVGDPDVL DTWATSSLTP QLAGGWGERP DLFAKVFPME LRPQGQEIIR
TWLFYTVVRA ELAFGRLPWR RALISGWVLD PDRKKMSKSK GNVVTPMPLV ERFGADAVRH
WAANGRPGTD TAADEAQMRV GRRLAIKVAN ASRFALSRVA SRSSHKPAWV PIDAAELEAL
DATIARATEL LEAHDYTSAL AAIEEHFWAF CDDYLELVKV RAYGDDSPEH ASALAALEIG
VELFIRAFAP YLPFVTEEVW SWFREGSVHR SAWPQPGEAM RRYVELVGEG HGVVDPAVRA
AVSWSLAQVR RAKTSEQRSL RTPVERLVVW APRAWLEALA AAEDDLRAAG GVLALERHEA
DEPRAVVELA PPEQH
|
|---|
| |