| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4923 |
|---|
| Symbol | |
|---|
| ID | 8329121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 5870927 |
|---|
| End bp | 5871964 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644945363 |
|---|
| Product | protein tyrosine/serine phosphatase |
|---|
| Protein accession | YP_003102595 |
|---|
| Protein GI | 256378935 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2365] Protein tyrosine/serine phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGTC TTCGTGTTGT GGTGGCAGCC ATCGGGGTGC TCGGGCTCGT CACGGGGCTC
ACCGCCCCGG CGGGCGCGGC CCCCGAGGCG GTCGCGTTCA CCCAGGCCAC CGCCGTGCGC
GGCGCGGACG GCGGCCACGC CCTGTCGTGG GCCTCGGCGG CGGGGTCGGT CCGGATCACC
GCCGTCACCT CGCCCGACGC CACCGCGGGC GTCGAGCTCG GCCAGTCCGG CGGCTCCGGC
GCGCTGACCG CGCCCCCGCT GCCCGCCGCC GACCGCTGGT ACTTCCGCCT GACCCCGGAC
CGGGGCGACC CGCTCGTCGT CGCCGACCGG CACCTGGGCT TCGCCTCCGC CAAGAACTTC
CGCGACGTGG GCGGCTACCG CACCTCGGAC GGCCGCTGGG TGCGCAACGG CGTCCTCTAC
CGCTCCACCA AGCTCAGCGA CCTGGACGCC GACGAGCAGC GCAGGCTCAC CGGCCTCGGC
GTGGTGAAGG TGGTCGACCT GCGCAACCTC GTGGAGCGCC TGGAGGAACC CGACCGCCTG
CCCGCGGGCG TCGCCCACCA GGTCGCCGAC GTCGCCTCCC TGGAGCACGG CGTCCGCTTC
CACGACCAGG CGCTGATGAC CCTCCTGGAG GCCATCGCCG CAGGTCTGCT CTCCGGCTCC
TCGGACCTCG GCCAGTCCGT CGGCTACCCG TTCATGGTGA ACTTCGTCGG CGCCGACCGC
GCGTTCCGCG ACTTCCTGAC CGCCGTGGCC ACCGCCCCCG GCCCGGTCGT CGTGCACTGC
TCGGCGGGCA AGGACCGCAC CGGCTGGGCC ACGGCCGTCC TGCTCACCCT GCTCGGCGTG
CCCTCCGAGG TCGTGGAGGC GGACTTCCTG GCCAGCAACA CCTACACCGG CGACCCGCGG
GCGGTGGAGC TGTCCTGGCT GCGCGCCGCG CAGAACCAGG TCCAGCGCCT GTACGGCGGG
TTCGACGCCT ACCTGCGCCA GGGCATCGGG CTCGACGAGG CCACGATCGC CGCGCTGCGC
GCGAAGTTCC TGGTCTGA
|
|---|
| Protein sequence | MRGLRVVVAA IGVLGLVTGL TAPAGAAPEA VAFTQATAVR GADGGHALSW ASAAGSVRIT
AVTSPDATAG VELGQSGGSG ALTAPPLPAA DRWYFRLTPD RGDPLVVADR HLGFASAKNF
RDVGGYRTSD GRWVRNGVLY RSTKLSDLDA DEQRRLTGLG VVKVVDLRNL VERLEEPDRL
PAGVAHQVAD VASLEHGVRF HDQALMTLLE AIAAGLLSGS SDLGQSVGYP FMVNFVGADR
AFRDFLTAVA TAPGPVVVHC SAGKDRTGWA TAVLLTLLGV PSEVVEADFL ASNTYTGDPR
AVELSWLRAA QNQVQRLYGG FDAYLRQGIG LDEATIAALR AKFLV
|
|---|
| |