Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_4869 |
Symbol | |
ID | 8329067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 5799746 |
End bp | 5806618 |
Gene Length | 6873 bp |
Protein Length | 2290 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644945309 |
Product | YD repeat protein |
Protein accession | YP_003102541 |
Protein GI | 256378881 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGCGCTG GATCGCCGTC CTGGAGACAG CGGACAGCGG CGCTGGGTGT CGTCGTCGTG CTCACGGTCG CCTTCGGGCA GGCTGTGGCC ACAGCCGACC CCGGAGCCGA GCTTCCGCCG TCGCCGCAGG AAACCCCCGT CGCCGTGCAG GACGCACCGG AGACACCGCT TCCGGACAAC CCGAACACCG CGATCGCCCT GACCAGTCCC GCCGAAGCGC ACTGGCCCGA GCCAGCATCG GCGGACCTCG ACCTCTCCGC CGATGGCGGA ACCCCCGCGC AGGCAGCCGC CCGCGTCGCG GGCACGCCCG TGCCGGTCGA GGGAACCCCC GTCGCCGTCA CGGTCACGGG TGACACCGCT CAGCGCCGTG CCGCCGCGCA GAGCGAAGAG GGGGCCAAGG TCCGCGTCGA GGTCGAGGAC CGCGCGGACA GCAAGGCCTT GGTGGGCAAC GGCGTCGTGT TCAGCGTCGC CGACCGGGGC AACGCCGCTG GCAAGCCGCT GGACGTCACC TTCGACTACC GCTCGTTCGC CGACGCCTTC GGAGGCGGGT TCGGCTCGCG CCTCAAGCTC AGCGCGCTGC CGGCCTGCGC GCTGAGCACG CCGGACAAGG CCGAGTGCCG GGTCGAGACC CCGGTCGAGA ACGCGGCCAA CAACACCGAG GCCCGCTCGC TCTCCGGGAC TGTGAGCCTG GACGCCGAAC AGCCCGCAGT GTTCGCGGTC AGCGCGGCAG CGGGCAGCTC CACCGGCACC TTCGCGGCCA CCTCGCTGGC CGCCGCGGGC TCGTGGAACG CGGGCGGCTC CTCCGGTGAC TTCACCTACG GTTACCCCCT GCGGGTGCCG CCCGCCGTGG CGGGCAGCGT GCCCTCGGTG TCGCTGGGCT ACTCGGCGCA GAGCGTCGAC GGCCGCACGT CCGCGTCGAA CAACCAGGCC TCCTGGCTCG GCGACGGCTG GGACGCCTCG CCCGGCGGGT TCGTCGAGCG CTCCTACAAG TCCTGCTCAC AGGACCTCGG CGGCAACAAC GGCCAGACCA AGACCGGCGA CCAGTGCTGG GCCACCGAGA ACGCCACGAT CAGCCTCGTC GGCGTGTCCG GCAAGCTCGT CAAGGACAAG ACCACCGGCA AGTGGCGCCC GGAGAGCGAC GACGGCGCGC GCATCGAGCT GCTCACCGGC GCTGCCAACG GTGACGAGGG CGACGCGGGC AAGGACGTCG GCGAGCACTG GAAGGTCACC ACTCCCGACG GCACCCAGTA CTTCCTCGGC CTCAACCGGC TTCCCGGTTG GAGCGAGGGC AAGCCGGAGA CCAACTCCGC CTGGACGGTC CCCGTCTACG GCAACAACAC CGGCGAGCCC TGCAACAAGG GCACCTTCGA CTCCTCGTGG TGCCAGCAGG CGTACCGCTG GAACCTCGAC TACGTCGTCG ACCCGAACGG CAACGTCACC ACGTACTACT ACAACAAGGA GGTCAACCAC TACGGCCGCA ACGCGGACCC GGCCAAGACG ACCCCCTACG TGCGCGAGGG CTACCTCAAC CGCATCGAGT ACGGCCTGCG GGCCGACAAC CCGTACGCCA CCCCGGTCGC CAAGGTCGAC TTCGAGACCG CAGAGCGCTG CCTTCCCAGC GACACCGTCG ACTGCGCGCC CGACAAGATC AAGACCTCGC CCGGCTCGTG GCCGGACGTG CCCGCGGACC AGCTCTGCGC CGCCGGCGAG CAGTGCACCC AGCGCAACTC GCCGTCCTTC TTCAGCCGCA AGCGCCTGAC CAAGGTCATC ACCCGGATCT CCCAGTCCGG CGGCTGGCAG GACGTGGACT CCTGGAAGCT GGAGCACGCC TACCTGCCCA CCGGTGACGG AAACGGGCCT TCGCTCAACC TCAGCTCCAT CGTCCACAGC GGACACGTCG GCGGGACGAT CACGTTGCCC GCCACCACGT TCGCCTACAA GGCGCTGGCC AACCGGGTGG ACGGGGTCGA CCACGGGATG CCGTGGACCC GCTACCGGAT CAACCGGATC ACCGGCGAGA CCGGCGCGGT CACCGAGGTC ACCTACAGCG ACCCGGACTG CGTGCCCGGT TCCAGGATGC CCGAGGCCCC GGACAAGAAC ACCCTGCGCT GCTACCCGGT GTGGTGGAGC CCCGATGGCG CGCCGGAACC GATCCAGGAC TGGTTCCACA AGTACGTCGT CACGTCGGTC TCCCACACCG CCAGCACCGG CGGCTCAGCC ATCATGCCGA CCTACTACGA GTACAAGGGC GCTCCCGCCT GGCACTTCGA CGAGAACGAC TTCGCCCAGG ACAAGCACCG CACCTGGTCG CAGTGGCGCG GCTACGAGAC CGTCCGCATC ACCAAGGGCG CGACGGTCAG CGCGCAGAGC GCGTCCGAGA CCGTCTACTT CCGGGGCATG CACGGCGACA AGCTGTCCAG CGGCACCCGG AGCGTGGACG TCGAGAACAG CGAGGGCGAA CCGCACCGCG ACGACGACCG GCTGCGCGGC GCGGTGCGCG AGATGCGCCA GTACAACGGC GCCGAGCTGG TGTCCGCCTC GGTCAACGAC CCCTACCTGC CCGAGACGCC GACCGCCGAG GACGCGGCAG GCCGCAAGGC GTTCGTCAGC GGCGTCGCCG CGGTGCGCGG GCGCAGCAAG CTCGCGGACG GGTCCTGGCG GCGCACCAAG GTCGTCAAGA CGTTCAACGC CGAAGGCATC CCGACCACCG CGGAGGACCA CGGCGACCTC GCCGTGACCG GTGACGAGAG CTGCACGCGC ACCGAGCACG CCCGCAACGA GACCGCGTGG ATGCTCACGT ACGCCAAGCA GGTCGAGACG GTCAAGGGCA CCTGTGACGT CCAGGCGTCA CCGGGGACGA TCCTGTCCTC CGCCCGCTCC TCCTACGACG GTCAGGAGCA CGGAGCCGCC CCCACCAAGG GACTGATCAC CAAGGCCGAG GTGCTCGACG GCTGGGACTC CGCGGGCCAG AAGTGGATCA CCGCGTCCAC CTCGACCTAC GACGGCTACG GCCGTCCTCT GGAGATCACC GACTCGGGGG GCCACAAGAG CCGCACCGAG TACATCCCGG CGACCGGGGC GCCCGCCCAG ATCAAGAGCA CCAACCCGCT CGGGCACACC GCGACCGAGC ACGTCGAAGC CGCCTGGGGC GCATCCGTCG CCTCGGTGGA CGCCAACAAC CGGCGTTCCG ACCTCTCCTA CGACGCGCTG GGCAGGCTGG TCGCGGCTTG GACGCCTGGG CACGACAAGA ACGCGGTGAC CGCGGACGCG GTGTTCGAGT ACCACTACAA CACCACCCAG CCCAGCGTCG TGGTCACCAA GCAGCGTCAG GACGACGGCG GCTACCTGAC GAGCTACACG CTCTACGACG GTCTGATGCG CCAGCGGCAG ACCCAGATCC CCACGCCGTA CGAGAAGGGT GGTCGCCAGA TCACCGACAT CTTCTACGAC TCGCGCGGTC TGGCGCACAA GACGAACGGC CTCTACTACA ACACCGAGCC GCCCAGCGAC AAGCTGGCGC TGACCTTCGA CAACAAGGTC CCAAACCAGA CCGTCACCGA GCACGACGGC ATGGGGCGCG TCACCGCGGC GATCTTCCGG GTCGACGACG TGGAGAAGTG GCGCACCACC ACCGCCTACA GCGGCGACCA GGTGCACACC ACCCCGCCTG CGGGCAGTCC GGCCACGACG ATCATCAACG ACGCCCAGGG ACGCACCACC GAGAAGCGCC AGTACGAGAA CGGCATCGGC AGCACGTACG ACGCCACGAA GTACACCTAC AACGCGGCCG GTCTGCTGGA GACGGTGACC GATCCGGCGG GCAACACCTG GCGCTACGGC TACGACCTGC GAGGCCGCAA GGTCAGCACC GATGACCCGG ACACCGGGCG CAGCACGATC GCGGTCAACG TGCTCGGCCA GATCACCAGC ACCACCGACG CCGAGGGCCG CACGGTCGCC AACACCTACG ACCAGCTCGG CCGTCCCACC GCTCGCTACC AGGACTCGCC CCAGGGGACG AAGCTGGCCG AGTGGGAGTA CGACAGCGTC CAGGGCGGCA TCGGAATGCC CGCGCTGTCC CGGCGGCTGG TCAATGGTGC GGAGTACACC ACGCGCACCA CGGGGTACGA CGACGCCGGA CGGCCGACCG GCACGGAGAT CAGCATCCCC GAGGTCGAGG GCGTGCTGGG CACCACCTAC CAGGCCACTC AGGACTACAC CTACACGGGC AAGCCCGCGT CGACCGGCCT GCTCGACGTC ATCTCAGGTG ACGAGCTGAT CGTCGAGGGC GAGACGCTCA CTCATTACTA CGACAACGCC AACGGCTCCC TGGAGCAGAC CGTCGGGCAG CAGACCTACG TCACGAACAC CGACTACAGC GCGCACGGCG AAGTCATCGG CACGGTGCGC GGAGAGAACT ACGAAGGCGC CAAACAGGTC GCCGTCACCA ACTCCTACGA GGTCGGCACC CGCCGCCTCG TCACGTCGGA GGTGCACGCC CTCTCCACGC GGACGACCCA GCTGGCCAAC CGGAACTACG CGTACGACGC CTCCGGCAAC ATCACCCGCA TCGCGGACGC GCCCTCGGGC ACCGTGCCGG ACATCCAGTG CTTCGCCTAC GACCACCTGC GCCGGATGAC CGACGCGTGG ACCCCGTCCA CGGGGGACTG CAACGCGGTG AAGTCCACCG CCGCGCTGGG CGGCGCCGCG CCGTACTGGC ACTCCTGGAC GTTCGACAAG ACCGGCAACC GGCTCACCGA GACCCAGCAC GCCGCTGCGG GTGACACGGT CCGCACCACC GCCTACCCGG CGGCGGGCCA GCCCCAGCCG CACACGGCGA CCTCGGTGAC CACGACCAGC CCGACCGGCG ACTCGATCGA CACCTTCGCC TACGACCGCT CGGGGAACAC CACCTCGCGC CTGGTCGGCG GCGACCGGCA GGTGCTGGAG TACGACGTCG AGGGCAAGGT CTCCAAGGTC CGCAACCCCG ACGGCAAGGA GTCCACCTAC CTCTACGACG CCAACGGCTC ACGCCTGATC AGCCGCGAGC CGTCCGCGAC GACCCTGTAC GTGTTCGGCC AGGAGATCCG CCTGGAAAAG GGCACGTCCA AGCCGAGCTG GACCCGGCAG TACAGCCACG GCGGCGAGGT CGTGGCGGTG CGCAACAGCG TCAGCGGCCT GAAGTGGGTC ATCGCCGACC ACCAGGGCAC CAACCAGATG TCGGTGCACC CGGACACCCT GGAGCCGCAG CGGCGCAGGC AGACCCCGTA CGGCGAGGCC CGAGGCGGCC TGCCGTCGGC GTGGCCGGAC CGCTTGGGCT TCGTGGGTGG TCGCAATGAC GAGTCGGGGC TGACGCAGGT CGGTGCGCGG TTGTACGACG GTGCGTCGGG CCGGTTCCTG ACCGCGGACC CGGTCATCGA CAACAACGAC CCGCAGCAGA TGAACGGGTA CGCGTACAGC AACAACAGCC CGGTCACGTT CAGCGACCCG ACAGGGTTGC GGCACTGTGG AATCGACGGC GTGCTGTGCG GGCCTCGGAT CGAGGCCATC CACGGCAGCC CGGAGGAGTA CGAGGCGGCA CGTCAGGCTG AGAAGGCGCG CCAGAAGGGC TGGCAGCAAC AGCCCAACGC GGCGACTAGC GGCAACGTCG AGCAGCAGGC GGCCCAGGAC CGGCGTGCGG CTGGGATCAG CGACGTCGAG TACCAGAACG CGCTGGCGAA CGCCCACAAG ACGAAGTGGG ACGTGATCAA GGAAGTCGCC TGGGAGGTCA TCAAGGACAT CTCGGGTTGG AACGACATCG TCGACTGCTT CAGCCGGGGC GACATCCTGG CCTGCGGTGG CCTGGTGTTC GACCTGGTGC CCTGGGGCAA GGTCGGGCGT GTCCTGGAGG CCGGTTACAA GGCGTACAAG GCGGTTGACT CGCTGGTCGA CACCGTGCGG AACGCGCGGG CGATCCTACG TCGGGTCGAC GACATCACCG CTGCCGCCGA GCGGGCGGTG CTGAGGTCGC AACAGCGGAA GCTCGGCGGT GGTAGTGCCA GTTGCCCCAA CCACAGCTTC GTCGGAGCGA CCAAGGTCGT GATGGCGGAT GGCTCGGAGA AACCGATCTC CGAGGTCGAG TTGGGCGACC AGGTCAAGGC GACCGATCCG GAAAGCGGCG AAACCACCGC GCGTGAAGTC GTGGCGACCT TTGTCCACTC TGATGAGGGG GACATGACTC GTCTGGTCGT GCGTGGTGAG AGTGGCGAAA ATGGGACAGT CGACGCGACC TCGTGGCACC CGGTGTGGGT CGATGCCAAG GGCAGGTTTG TCAACATCGG CGAGCTGGCG GTCGGGGACC GGTTGACCTC GGTCGACGGG ACGTCACCCG AGGTTGTCGG GGTCCAGGAC TATACCCACT TCGAACCAGT TTATGACTTG ACGGTCGAAG GTGTGCATAC GTACTACGTT TTGTCGGGTG TGCAGTCGAC CCTGGTGCAC AATTGTGACT CAACCCTGTG GGAGCCGAAT CGACCTGATA CTGACAACGA ACCGCAGGAA TGGATTCCTG ACGATGTTTG GATCTCGAGT GGCGAGAACT TGCTGCCAGG TGAGTACCAC TATGTAGTAA TGCCTAATCG GAGTGTCCGC GCCTTTCATG ATGGAACGAC TTTCGAAAAC TACCCTGCTG CGGGGCACAC CAGCCTCGGG CGAGGGGGAC TGGTTTCCGG AGCGGGCACA TTTGAGGTCG ACTCCGATGG TTCGATTGCC GCCTATGATA ACCACTCGGG TCACTATAAA CCCGATAGGT CAATCTATCG AACTGTAACA TCGGCTCTTC TTGATAGCGG TTTTGACGTT TCGCGTGCAC AGTGGACTGA TCGAAACAGG TAA
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Protein sequence | MSAGSPSWRQ RTAALGVVVV LTVAFGQAVA TADPGAELPP SPQETPVAVQ DAPETPLPDN PNTAIALTSP AEAHWPEPAS ADLDLSADGG TPAQAAARVA GTPVPVEGTP VAVTVTGDTA QRRAAAQSEE GAKVRVEVED RADSKALVGN GVVFSVADRG NAAGKPLDVT FDYRSFADAF GGGFGSRLKL SALPACALST PDKAECRVET PVENAANNTE ARSLSGTVSL DAEQPAVFAV SAAAGSSTGT FAATSLAAAG SWNAGGSSGD FTYGYPLRVP PAVAGSVPSV SLGYSAQSVD GRTSASNNQA SWLGDGWDAS PGGFVERSYK SCSQDLGGNN GQTKTGDQCW ATENATISLV GVSGKLVKDK TTGKWRPESD DGARIELLTG AANGDEGDAG KDVGEHWKVT TPDGTQYFLG LNRLPGWSEG KPETNSAWTV PVYGNNTGEP CNKGTFDSSW CQQAYRWNLD YVVDPNGNVT TYYYNKEVNH YGRNADPAKT TPYVREGYLN RIEYGLRADN PYATPVAKVD FETAERCLPS DTVDCAPDKI KTSPGSWPDV PADQLCAAGE QCTQRNSPSF FSRKRLTKVI TRISQSGGWQ DVDSWKLEHA YLPTGDGNGP SLNLSSIVHS GHVGGTITLP ATTFAYKALA NRVDGVDHGM PWTRYRINRI TGETGAVTEV TYSDPDCVPG SRMPEAPDKN TLRCYPVWWS PDGAPEPIQD WFHKYVVTSV SHTASTGGSA IMPTYYEYKG APAWHFDEND FAQDKHRTWS QWRGYETVRI TKGATVSAQS ASETVYFRGM HGDKLSSGTR SVDVENSEGE PHRDDDRLRG AVREMRQYNG AELVSASVND PYLPETPTAE DAAGRKAFVS GVAAVRGRSK LADGSWRRTK VVKTFNAEGI PTTAEDHGDL AVTGDESCTR TEHARNETAW MLTYAKQVET VKGTCDVQAS PGTILSSARS SYDGQEHGAA PTKGLITKAE VLDGWDSAGQ KWITASTSTY DGYGRPLEIT DSGGHKSRTE YIPATGAPAQ IKSTNPLGHT ATEHVEAAWG ASVASVDANN RRSDLSYDAL GRLVAAWTPG HDKNAVTADA VFEYHYNTTQ PSVVVTKQRQ DDGGYLTSYT LYDGLMRQRQ TQIPTPYEKG GRQITDIFYD SRGLAHKTNG LYYNTEPPSD KLALTFDNKV PNQTVTEHDG MGRVTAAIFR VDDVEKWRTT TAYSGDQVHT TPPAGSPATT IINDAQGRTT EKRQYENGIG STYDATKYTY NAAGLLETVT DPAGNTWRYG YDLRGRKVST DDPDTGRSTI AVNVLGQITS TTDAEGRTVA NTYDQLGRPT ARYQDSPQGT KLAEWEYDSV QGGIGMPALS RRLVNGAEYT TRTTGYDDAG RPTGTEISIP EVEGVLGTTY QATQDYTYTG KPASTGLLDV ISGDELIVEG ETLTHYYDNA NGSLEQTVGQ QTYVTNTDYS AHGEVIGTVR GENYEGAKQV AVTNSYEVGT RRLVTSEVHA LSTRTTQLAN RNYAYDASGN ITRIADAPSG TVPDIQCFAY DHLRRMTDAW TPSTGDCNAV KSTAALGGAA PYWHSWTFDK TGNRLTETQH AAAGDTVRTT AYPAAGQPQP HTATSVTTTS PTGDSIDTFA YDRSGNTTSR LVGGDRQVLE YDVEGKVSKV RNPDGKESTY LYDANGSRLI SREPSATTLY VFGQEIRLEK GTSKPSWTRQ YSHGGEVVAV RNSVSGLKWV IADHQGTNQM SVHPDTLEPQ RRRQTPYGEA RGGLPSAWPD RLGFVGGRND ESGLTQVGAR LYDGASGRFL TADPVIDNND PQQMNGYAYS NNSPVTFSDP TGLRHCGIDG VLCGPRIEAI HGSPEEYEAA RQAEKARQKG WQQQPNAATS GNVEQQAAQD RRAAGISDVE YQNALANAHK TKWDVIKEVA WEVIKDISGW NDIVDCFSRG DILACGGLVF DLVPWGKVGR VLEAGYKAYK AVDSLVDTVR NARAILRRVD DITAAAERAV LRSQQRKLGG GSASCPNHSF VGATKVVMAD GSEKPISEVE LGDQVKATDP ESGETTAREV VATFVHSDEG DMTRLVVRGE SGENGTVDAT SWHPVWVDAK GRFVNIGELA VGDRLTSVDG TSPEVVGVQD YTHFEPVYDL TVEGVHTYYV LSGVQSTLVH NCDSTLWEPN RPDTDNEPQE WIPDDVWISS GENLLPGEYH YVVMPNRSVR AFHDGTTFEN YPAAGHTSLG RGGLVSGAGT FEVDSDGSIA AYDNHSGHYK PDRSIYRTVT SALLDSGFDV SRAQWTDRNR
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