Gene Amir_3420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3420 
Symbol 
ID8327610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp3990255 
End bp3990686 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content73% 
IMG OID644943924 
Productprotein of unknown function DUF107 
Protein accessionYP_003101164 
Protein GI256377504 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1585] Membrane protein implicated in regulation of membrane protease activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTTCG TGCCCGCGCT GATCTGGATG ATCCTCGGTG TCCTGCTGAT CGCGGCCGAG 
GTCTTGTCGG GTGACTTCGT GCTCGTCATG CTGGGCGCCG CCGCGCTCGG GGCGGCGGGA 
GCGGCGGGGC TGGGCGCCGA CCTGGTGGTC AGCGCCCTGG TGTTCTCCGC CCTGTCGCTC 
GGCCTGGTCG CCGGGGTCCG CCCGGTGCTC AAGCGCCGCC TGGACAAGGG GCTCGGGCAC 
CGCTCGGGCG TGGAGGCGCT GCTGGGCGGC ACGGCCGTCG TCGTGTCCAC AGTGGACGGG 
CACGGGGGTA GGGTCCGCAT CGGGGGCGAG GTCTGGTCGG CGCGGTCCAT GGACCACGCC 
GTGCTCGAAC CCGGCGCGGA AGTGACCGTT GTCGAGATCT CCGGCGCGAC CGCCGTGGTG 
CTGGGGACCT GA
 
Protein sequence
MGFVPALIWM ILGVLLIAAE VLSGDFVLVM LGAAALGAAG AAGLGADLVV SALVFSALSL 
GLVAGVRPVL KRRLDKGLGH RSGVEALLGG TAVVVSTVDG HGGRVRIGGE VWSARSMDHA 
VLEPGAEVTV VEISGATAVV LGT