Gene Amir_0624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0624 
Symbol 
ID8324784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp688177 
End bp688707 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content68% 
IMG OID644941165 
Productlarge conductance mechanosensitive channel protein 
Protein accessionYP_003098433 
Protein GI256374773 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1970] Large-conductance mechanosensitive channel 
TIGRFAM ID[TIGR00220] large conductance mechanosensitive channel protein 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.29249 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATCAAGG GTTTCAAGGA CTTCCTGATG CGCGGCAACG TCATCGACCT GGCGGTTGCC 
GTGGTCATCG GCGCCGCGTT CGGTTCGATC GTCACCGCGT TCACCAACAA CCTGATCAAC 
CCGCTGGTCG CGCTGGTCGG CGGCATGGAG AACCCCGTCG GGTTCGCCGT CCAGCTCGGC 
GCCAGCCCGA AGACGACGAT GGACTTCGGC GCGCTGGTCA CCGCGGTGAT GAACTTCGTG 
ATCATCGCGG CGGTCATCTA CTTCGTGTTC GTGCTGCCCA TGAACAAGAT CAAGGAGAGG 
AGGGAGCGCG GTCAGGAGGC GGGCCCGTCG GAACCGACCG ACGTCGAGCT GCTGAAGGAG 
ATCCGCGACC TGATGGTGGC CCAGGCGAGC CAGGGCAACC AGGGCGCCCA GCGGACCTCG 
GCGCAGTCCG GCCCCCAGTC CGCCCCGCAG CAGTACGCGA ACCAGCCGGG CACCGGCCCC 
AGGCCCGCCC AGCCGCCGCG CCCGAACACC CAACAGCACC CCCGAGGCTG A
 
Protein sequence
MIKGFKDFLM RGNVIDLAVA VVIGAAFGSI VTAFTNNLIN PLVALVGGME NPVGFAVQLG 
ASPKTTMDFG ALVTAVMNFV IIAAVIYFVF VLPMNKIKER RERGQEAGPS EPTDVELLKE 
IRDLMVAQAS QGNQGAQRTS AQSGPQSAPQ QYANQPGTGP RPAQPPRPNT QQHPRG