Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1772 |
Symbol | |
ID | 8252875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2071768 |
End bp | 2072649 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644935423 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003092043 |
Protein GI | 255531671 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0120296 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAAG GAAAAAATGC CGATGACTTT TTTAAGGTTC AGTTAGTTGG CTTCAGGAAG CAAATCCGAC TTGATGGTGG TTCGTGTATA ATAGAGGTTG ACAAAACGAT TGCAGAAGTC GAGTATACCG ATCTAATCAT CGTGCCGGCA ATTTGGGGTG ATGTGATGAG GGGAACACAA TTGAACAGGC ATTATTTTTC CTGGCTTATT AATCAGTATA AAAACGGAGC TGAAATTGCA AGTTACTGTG TCGGAGCTTT TATAGTTGCC GCAACCGGAT TGTTAAATGG AAAACGTTGT GCCACGCACT GGGCATATAC AAACGAGTTG CTAGCCTATT ATCCCGAAAT CAAGCTCGTT CCGGAGAAAA TAATAACGGA GCAAAACGGC ATTTATTCAA GTGGCGGAGG GACATCTTAT TGGAACTTGT TATTATATCT CCTGGAAAAG TTTACGTCAA GAAAAGTAGT CATTGCCGCG ACTAAATATT TCTTACTGGA TCTCGCCAGA AACAGCCAAT CTGAATTTGT GATGTTTAAG GGACAGAAAG AACATGGCGA TAAATTGGTA GAAAAGGTGC AATTGTATAT TGAGAATAAT TATCAGGAGA AAATTAATAT TGAACGTTTG GCGACTGATT TTTCTGTGGT CAGAAGAACG CTAGAAAGGC GGTTCAGCAA GGCAACAAAA AACACCATTG CGGAATATAT ACAACGGACA AAAATAGAGG TAGCAAAGAA AGAGATCGAG AAGGACAGAA AAACAATCAA TGAAATAATG TATGAACTCG ATTATGCGGA TAAGAAAGCT TTTAAAGATT TGTTTCTTAA AATAACTGGC TTGACGCCAA TAGAATATAA AAGGAAATAC GTCAGAAATT GA
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Protein sequence | MQQGKNADDF FKVQLVGFRK QIRLDGGSCI IEVDKTIAEV EYTDLIIVPA IWGDVMRGTQ LNRHYFSWLI NQYKNGAEIA SYCVGAFIVA ATGLLNGKRC ATHWAYTNEL LAYYPEIKLV PEKIITEQNG IYSSGGGTSY WNLLLYLLEK FTSRKVVIAA TKYFLLDLAR NSQSEFVMFK GQKEHGDKLV EKVQLYIENN YQEKINIERL ATDFSVVRRT LERRFSKATK NTIAEYIQRT KIEVAKKEIE KDRKTINEIM YELDYADKKA FKDLFLKITG LTPIEYKRKY VRN
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