| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1262 |
|---|
| Symbol | |
|---|
| ID | 8252360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1492444 |
|---|
| End bp | 1492968 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644934915 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_003091540 |
|---|
| Protein GI | 255531168 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.68115 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATAA AAATAAAAAG CCCGAAAGAC TCTTTCACCA TCATGAATGA ATTGGTATTA
CCCAATGACA CCAATACGCT GAACAATTTA ATGGGAGGCC GTTTACTGCA TTGGATGGAC
ATTGCAGCGG CCATTTCTGC TCAGAAACAT TGCAACCGGA TTGTAGTTAC TGCATCAGTA
GATAATGTAT CCTTTCAGCA GCCCATTAAA CTTGGCGATG TGATTACCAT TGAGGCTAAA
GTAACTCGTG CCTTTAATAC TTCAGTAGAA GTAAGACTGG ATGTATGGGC TGAAAATATC
CCTTCTGGAA GCAGGGCCAA ATCCAACGAA GCTTATTATA CTTTTGTGGC GGTAGACCAG
AGCGGCAGGA CCATACCTGT TCCTGAACTA AAACCGGAAA CCGAAGCGGA AAAGGAATTG
TTTGCCGGAG CTTTAAGAAG AAGGCAATTG CGCTTGATAT TAGGCGGTAA AATGAAACCT
AATGATGCAA AAGAGCTAAA GGCGTTGTTT TTTCCTGAAG AATAA
|
|---|
| Protein sequence | MSIKIKSPKD SFTIMNELVL PNDTNTLNNL MGGRLLHWMD IAAAISAQKH CNRIVVTASV
DNVSFQQPIK LGDVITIEAK VTRAFNTSVE VRLDVWAENI PSGSRAKSNE AYYTFVAVDQ
SGRTIPVPEL KPETEAEKEL FAGALRRRQL RLILGGKMKP NDAKELKALF FPEE
|
|---|
| |