Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1085 |
Symbol | |
ID | 8224656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1282796 |
End bp | 1284913 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644928947 |
Product | RNA binding S1 domain protein |
Protein accession | YP_003085499 |
Protein GI | 255034878 |
COG category | [K] Transcription |
COG ID | [COG2183] Transcriptional accessory protein |
TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.972092 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTACA CCCTAATTGC ACAACAGGCC GGCGTGAGCG ACAAGCAAGC GCGGAATACC ATTGCGCTGT TCGAAGAAGG CGCCACGGTG CCGTTTATCG CCCGGTATCG GAAGGAAGCG ACCGGCGGGC TCGACGAGGT ACAGATCGGC AACGTCCGGG ACGCCTGGCA GAAGCAGCAG GAAGTCGAGA AACGGCGTGA GGCTATTTTG AAGAGTATCG GGGAGCAGGG GAAACTCACT CCCGATCTGA AAAAGAAGAT TGAAGCCGTT TTTTCACTGA CTGAGCTCGA AGACCTTTAC TTGCCCTATA AACAGAAAAG AAAGACCCGC GCAACCATTG CCATTGAAAA GGGTCTGGAA CCGCTTGCAA AGCTGATTTT TGAAGGAAAA GAGCGCGATC CGGAAGGCAA GGCAGCATCG TTCCTGAATG ATCAGGTGGC CAATGCGGCC GATGCATTGC AGGGCGCGAG GGATATTATC GCCGAATGGA TCAACGAGAA TCAGGAAGCG CGGACGAAGA TCCGGTATAC TTTTCAGAAG GGGGCGGTCA TCACGTCGAA AGTCAAAAAG AAAAAAGAGG AGGAAGGGGC CAAATACCGC GATTATTTCG AGTTTTCGGA GCCTTTGGCC AAAATACCTT CCCACAGGCT GCTGGCATTG CGCCGGGGCG AGGAAGAGGG AATCCTGAGC GTGGATATTT CGCCGGACGA GGACTCGGCG CTCGAAGCGC TGGACCGGCT ATTTATGTTT GGGACGGAGG CCTGTAAAGA CCAGCTCGAA CTCGCGATTG GCGATAGTTA CAAGCGGTTG CTGAAACCGT CCATTGAAAC GGAGTTTGCC AATTTGTCCA AGGAAAAAGC CGACGTGGCC GCGATCCAGG TCTTCTCGGA AAACCTGCGG CAGCTGCTGC TCGCATCGCC ATTAGGCCAG AAAACCGTGC TGGCGATCGA CCCGGGCTAC CGCACGGGCT GCAAAGTAGT GGTGCTCGAT GGCCAAGGCA ACCTCATGGC CGACCACGTC ATTTATCCTT TCGACAAGCC GGCTGATGCC GCCGCACGTA TCAGCGAGCT CATCCGTAAG CACAAGGTGG AGGCCATCGC CGTCGGTAAT GGAACGGCTG GGCGCGAGAC GGAGGATTTT GTAAAGAAGC TGCTCGACGG TTCGGAAAAA TCTTCGGAAA TCGGGCTTTT CATGGTGAGC GAGCAGGGCG CGTCCATCTA CTCGGCGTCG GAAGTGGCGC GGGAGGAATT CCCCGATAAG GATGTTACCG TTCGCGGCTC TGTGTCGATC GGGCGCAGGC TTATGGACCC GCTTGCGGAG CTCGTGAAGA TCGATCCGAA ATCCATTGGT GTAGGCCAGT ACCAGCACGA TGTTGATCAG AATTCATTGC GAAATGCTTT GGATATAGTC GTAGAAAGCT GCGTGAATTC CGTAGGCGTA AATCTCAACA CGTCGAGCAA GCATTTGCTG CGCTATGTTT CGGGCCTTGG GCCCGCTTTG GCGCAGAATA TCGTGGATTT TCGGGCTAAA AACGGAAATT TCAAATCACG CCAGCAATTA TTGAAAGTGC CGCGCCTCGG GGCCAAGGCT TTCGAGCAGG CCGCAGGCTT CCTGCGTATT GAAAATGGAG CTAATCCATT GGATAACAGC GCAGTACACC CGGAGCGATA TGCCCTCGTA GAGCAAATGG CGAAGGATGC AGGCAGTACT GTGAAGGATC TGATGCAGAA AGCCGAGCTG AGGCGGCAGG TCAGGATCGA AAAGTATGTT TCGGAGTCGG TGGGGTTGCC TACGTTAAAG GACATCCTGG CCGAGTTGGA AAAACCGTCG CGTGACCCGC GCGCGGAAAT CAAGAAGTTT GAGTTCGACA GTTCCGTCCG GAAGCCCGAG GACCTGAAAG TCGGAATGGT GCTCCCGGGC ATCGTCACCA ACATCACAGC CTTCGGCGCG TTTGTCGATG TGGGCGTGAA GCAGGACGGC CTGGTGCACG TGTCACAAAT GGCCGAGAAG TTTGTGAAAG ATCCGAACGA AGTCGTGAAG TTGCAGCAGC ACGTGACCGT GAAAGTCACC GAGGTAGACC TCGCCAGGAA GCGGATCGCA TTGTCGATGA AACTTTGA
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Protein sequence | MNYTLIAQQA GVSDKQARNT IALFEEGATV PFIARYRKEA TGGLDEVQIG NVRDAWQKQQ EVEKRREAIL KSIGEQGKLT PDLKKKIEAV FSLTELEDLY LPYKQKRKTR ATIAIEKGLE PLAKLIFEGK ERDPEGKAAS FLNDQVANAA DALQGARDII AEWINENQEA RTKIRYTFQK GAVITSKVKK KKEEEGAKYR DYFEFSEPLA KIPSHRLLAL RRGEEEGILS VDISPDEDSA LEALDRLFMF GTEACKDQLE LAIGDSYKRL LKPSIETEFA NLSKEKADVA AIQVFSENLR QLLLASPLGQ KTVLAIDPGY RTGCKVVVLD GQGNLMADHV IYPFDKPADA AARISELIRK HKVEAIAVGN GTAGRETEDF VKKLLDGSEK SSEIGLFMVS EQGASIYSAS EVAREEFPDK DVTVRGSVSI GRRLMDPLAE LVKIDPKSIG VGQYQHDVDQ NSLRNALDIV VESCVNSVGV NLNTSSKHLL RYVSGLGPAL AQNIVDFRAK NGNFKSRQQL LKVPRLGAKA FEQAAGFLRI ENGANPLDNS AVHPERYALV EQMAKDAGST VKDLMQKAEL RRQVRIEKYV SESVGLPTLK DILAELEKPS RDPRAEIKKF EFDSSVRKPE DLKVGMVLPG IVTNITAFGA FVDVGVKQDG LVHVSQMAEK FVKDPNEVVK LQQHVTVKVT EVDLARKRIA LSMKL
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