| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0089 |
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| Symbol | |
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| ID | 8223655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 105391 |
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| End bp | 106758 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644927968 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_003084525 |
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| Protein GI | 255033904 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACAG AAACAATCCG TCAGCAGGAA GTGATTTGCG CGCTCGCGAC GCCCTCGGGC
GTGGGCGCGA TCGGTGTTAT ACGCGTATCG GGCCTGGGCT CGATCGCGAT GGTGAACAGC
GTTTTCAAAG GCAAAAACCT CGAAAACGCC GAAAGCCACA CCGTGCATTT CGGCACCATC
TTCTCTGGCG ATGAAATTAT TGACGAAGTG CTTGTGACGG TTTTCAAAAC GCCGCGCTCA
TTTACCAAAG AGGATTCGGT GGAGATTTCG TGCCACGGCT CGGACTACAT TATTCGTCAG
ATATTAAAGG TGCTTATTTT GAAAGGTGCC CGCATTGCCA AACCCGGCGA ATTCACGCAG
CGCGCCTTTT TGAACGGCCA GTTTGACCTC GTGCAAGCCG AAGCCGTGGC GGACTTGATC
GCCGCGGACT CGCAAGCGAG CCATAAAACT GCATTGAACC AGCTGCGGGG AGGTTTTTCC
AAAAAGCTGG CCTCGCTGCG AGCTGAGCTG ATTCATTTTG CTTCTTTGAT CGAGCTGGAA
CTGGATTTCG GCGAGGAAGA CGTGGAATTC GCCCAGCGGG ACGATCTGCG GCGTTTGATC
GATGCGTTGC TATCGACGAT CGAGCCGCTG ATCAGTTCTT TTGATTTTGG TAATGCGATT
AAGGAAGGTG TGCCGGTGGC GATTATCGGC TCGCCGAATG TGGGTAAGTC GACGCTTTTG
AATGCGTTGT TAAATGAAGA GAAAGCTATT GTGACCAGCA TTGCCGGCAC CACGCGGGAT
GTGATCGAGG ATACGATTGT GCTGGATGGA TTGAAATTCC GGTTTATCGA TACTGCTGGC
ATCCGGGAAA CGACCGATGT AGTGGAATCG ATTGGTATCG AGCGTTCGAA GGCCGCGATG
GATAAGGCGG ATATTGTGAT TTTCCTTTTT GACAGTGCGG AGACGCTGGC TGATAACCGG
GCGTTGGCGG CATTGCTACC TGCTGGTAAG GAGGTGCTAT TTGTTTTGAA TAAAACCGAT
ATTAATCCTT TGTTGGCCTC TGAACTGTCT GGCGATGCTT CGGACATTAT CCCCATTTCC
GCGCATACGC AGCAGAATTT GCCTGTATTG ACCTCGAAAC TCGTTTCCCT CGTGCACGGG
CAAGCGGCCG GGGATACGGT TGTGACCAAC CTGCGGCATT ATGAGCATTT GATGAAGACT
TCGGATTCTT TGACGGATGT TTTGAATGGG CTTTCGTTAG GTGTTACGGG GGATTTTCTG
GCGCAGGATA TCCGGTTGGC GCTGCATCAT TTGGGGGAGA TTACGGGGAC TATTGCAACT
GACGACTTAC TTGAAAATAT TTTTTCTCGC TTTTGCATTG GGAAATAA
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| Protein sequence | MNTETIRQQE VICALATPSG VGAIGVIRVS GLGSIAMVNS VFKGKNLENA ESHTVHFGTI
FSGDEIIDEV LVTVFKTPRS FTKEDSVEIS CHGSDYIIRQ ILKVLILKGA RIAKPGEFTQ
RAFLNGQFDL VQAEAVADLI AADSQASHKT ALNQLRGGFS KKLASLRAEL IHFASLIELE
LDFGEEDVEF AQRDDLRRLI DALLSTIEPL ISSFDFGNAI KEGVPVAIIG SPNVGKSTLL
NALLNEEKAI VTSIAGTTRD VIEDTIVLDG LKFRFIDTAG IRETTDVVES IGIERSKAAM
DKADIVIFLF DSAETLADNR ALAALLPAGK EVLFVLNKTD INPLLASELS GDASDIIPIS
AHTQQNLPVL TSKLVSLVHG QAAGDTVVTN LRHYEHLMKT SDSLTDVLNG LSLGVTGDFL
AQDIRLALHH LGEITGTIAT DDLLENIFSR FCIGK
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