Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3260 |
Symbol | |
ID | 8134232 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3678244 |
End bp | 3679932 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644866557 |
Product | hypothetical protein |
Protein accession | YP_003018816 |
Protein GI | 253689626 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1332] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
TIGRFAM ID | [TIGR01899] CRISPR-associated RAMP protein, Csm5 family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGCG ACCAGACGCC ACTTCGCCAC ACCGCCTGTG ACAGCGACAA CATGCAATGC TTCGCCCTCA CCTGCCTGTC GCCGGTGCAT GTCGCCACCG GCGACAGCCT GAACCCCGGT GAATACCTGA TAGCCGACAA TGCGCTGTAT GAACTGGGGC AAGGCGGCCT GAGCCCCGCG CTCACGGCGA CACAGCGCAG CGAGTTGCTC ACGATTCTGG AGAGCAATGC TCCTGATCTG CCGCTGGCCG TGCAGCGCTT TCTGGCACGG GAAGCGAGCA AGCTGAAATA CGCCGCCCGC CATGTGCGCC CGCTGTTGCC CGGCATCAGC CACTATTACC AGTCACGGCT CGGGCAGGTG ATGCAAAAAG ATCCCAAAAA CAAAAAGCAG GTGATCAACC AGCTAGAGCT GATGCGCCAC GTCGGTGCCG CACTGGGCGC GCCTTATATT CCCGGCTCTA CGCTCAAAGG GGCTATCCGC ACCGCGCTGG TCAGCGCGCT CAATCAAGGC CAGCCACTGC AAGCCGAACG ATTGGAAACA GAAAAGCTAA AAAGCACGGT GGCGCAGGAT GCGGAACGCC GGCTACTGGG CTTTGATACC CGCCGCGACG GCCCCCCCAA ACAGCGATAC CGCGTTGAGA ATGATCCCTT TCACTGGTTA CAGGTGGGGG ATGCCGTAAG CCCGGCAGAG CACCCGCCCA TGCTGGATTA CTGGCTGGTG CGCCGCCAGC CGCTTAAGCG CACGGAGAAG CAGAATAACA AGGCGGACAA TATGGAACTG TCGCCGGTTG AATGCCTCAA ACCCCGGCAA AGCCCGTTGC ACTGCCAGAT AACCGTGAAA ACGCCGCCCG CCGCTATCCC AATAAAAAAC CCGCTCCTGA AGCAGTGGCT TGGCAAGGTG TCGCAACTGG CGCAACAGGT GAACCAGATA ACCCTGCCGC AATGCCATCA CGAGCTGGAC TGGCTGGCCG AAAACCACAT CGGCACGGAT GATGCGTATG CCCCCGGCCA GAACGGGGTG GCGCAGATGC AACAATTACT GCGCCAGTTA GACGGCCCGC TACAGCGCGG CGAGGCACTC TTGCTGCGGG TCGGCAAATA CGGCGGGGCC ATCAGCAAAA CCGTGGAGGG CTGGCGGCAT ATCACCCGGC TCGGGAAACA AGGCACGCGC CCCACCTACC ACCCGGACGT CACCACCTGC GCGCTGGCGC TGACGCAGGC GGATGCGCTG ACGCAGGCGC TGCCCTTTGG CTGGGTGCTG CTGCACCGGC CTGACCAGCC GGAGGTGGCC GGGTTTGTCG CCAGCCATCA AGACTGGTGC CAGCGGCAGC AACAATGGCT GGCAGACCAT CAGCAACAGC AGCACGCCCA CCACCAGCAA CGCCAGCAGT TGGCTCAAGC CCGTGAAGAG GAAGCACAGC GGCTGGCAGA CAAAGCCCGC CAGAGCAAAG CACGCCAGTC CATCATGTCT CTGGCAGAAA GCCTGGCAAG TGAGCAACAG TTTCAGCGTA AACACCCCAA CGGCCCGCTG CGCGGTCAGT TAGCCACCTG TGTGGGTTGC GTTGCCGCTG AAGGCTCGGC AGAAGAGAAA GCCGATCTGT GTACGCTGTT TGACACCATC CTCAGCTATT GGGGCATCAA ACCCGGCAAA GACAAAAAAC TCACGACCTT GAGGAATAAG CTGTTATGA
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Protein sequence | MTRDQTPLRH TACDSDNMQC FALTCLSPVH VATGDSLNPG EYLIADNALY ELGQGGLSPA LTATQRSELL TILESNAPDL PLAVQRFLAR EASKLKYAAR HVRPLLPGIS HYYQSRLGQV MQKDPKNKKQ VINQLELMRH VGAALGAPYI PGSTLKGAIR TALVSALNQG QPLQAERLET EKLKSTVAQD AERRLLGFDT RRDGPPKQRY RVENDPFHWL QVGDAVSPAE HPPMLDYWLV RRQPLKRTEK QNNKADNMEL SPVECLKPRQ SPLHCQITVK TPPAAIPIKN PLLKQWLGKV SQLAQQVNQI TLPQCHHELD WLAENHIGTD DAYAPGQNGV AQMQQLLRQL DGPLQRGEAL LLRVGKYGGA ISKTVEGWRH ITRLGKQGTR PTYHPDVTTC ALALTQADAL TQALPFGWVL LHRPDQPEVA GFVASHQDWC QRQQQWLADH QQQQHAHHQQ RQQLAQAREE EAQRLADKAR QSKARQSIMS LAESLASEQQ FQRKHPNGPL RGQLATCVGC VAAEGSAEEK ADLCTLFDTI LSYWGIKPGK DKKLTTLRNK LL
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