| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3129 |
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| Symbol | |
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| ID | 8134090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3542976 |
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| End bp | 3543839 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866418 |
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| Product | spermidine synthase |
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| Protein accession | YP_003018688 |
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| Protein GI | 253689498 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAGA AAGAAATTTG GTATGAAACC CTACATGCCA ACTTTGGCCA GTATTTTTCG
GTTGATCGCG TGCTGTATCA CGAGAAGACC GATCATCAAG ATCTCATCAT CTTTGAAAAC
GACGCATTAG GCCGTGTAAT GGCGCTTGAC GGCGTGGTGC AAACCACCGA GCGAGATGAG
TTCATCTATC ACGAAATGCT CACCCACGTC CCTCTACTGT CACACGGCAA CGCCAAACGC
GTACTGATTA TCGGTGGCGG CGATGGTGGT ATGCTGCGGG AAGTCAGCCG ACATCACGGC
GTCGAACATA TCACGATGGT GGAGATCGAT GCAGGCGTAG TGGAATTCTG TCGCCAGTAT
TTGCCCAATC ACAGCGCTGG TAGCTATGAC GACCCGCGTT TTAATCTGGT GATTGATGAC
GGCGTGAATT TCGTCAGACA GTGCAGCGAC AAGTTTGACG TCATCATTTC CGATTGCACC
GACCCCATCG GCCCCGGCGA AAGCCTGTTC ACCTCTGATT TCTATCAGGG TTGCGCCCGC
TGCCTGAATG AAGGCGGAAT TTTCGTCGCG CAGAATGGCG TGTGTTTCCT ACAACAGGAT
GAAGCCGTCG GCAGCCATAA AAAGCTCGGC CACTATTTCA AGGATGTCAG CTTTTATCAG
GCGGCGATCC CAACGTACTA CGGCGGTATT ATGACGTTCG CCTGGGCCAG CAATAACCCG
GCACTGCGCC AGATAGACGC CACCACACTG CGCCAACGTT TTGCGCAGTC AGGAATTACC
TGTCGCTATT ACACGCCTGA TGTTCATATC GGCAGTTTTG CCCTGCCACA GTATCTGTTA
AGCGCGCTAC AGAATGCGCA ATAA
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| Protein sequence | MSQKEIWYET LHANFGQYFS VDRVLYHEKT DHQDLIIFEN DALGRVMALD GVVQTTERDE
FIYHEMLTHV PLLSHGNAKR VLIIGGGDGG MLREVSRHHG VEHITMVEID AGVVEFCRQY
LPNHSAGSYD DPRFNLVIDD GVNFVRQCSD KFDVIISDCT DPIGPGESLF TSDFYQGCAR
CLNEGGIFVA QNGVCFLQQD EAVGSHKKLG HYFKDVSFYQ AAIPTYYGGI MTFAWASNNP
ALRQIDATTL RQRFAQSGIT CRYYTPDVHI GSFALPQYLL SALQNAQ
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