Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2000 |
Symbol | |
ID | 8132944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2295943 |
End bp | 2296575 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644865290 |
Product | outer membrane protein W |
Protein accession | YP_003017577 |
Protein GI | 253688387 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA CATCTTTATT ATTGTTGGCA GCGGCGTTTA TGCCTGCGTT GGCACAGGCT CATCAAGCGG GTGATTTTAT TGTTCGGGCA GGCTCAGCAA CGGTGCGTCC TGCTGAAAGT TCGGACAACG TGCTGGGGTT GGGGGAGTTT CAGGTTAGCA ACAATACTCA GTTGGGCCTG ACTTTCAGCT ACATGGTGAC GGACAATATT GGGGTTGAAT TGCTCGCGGC CACCCCATTC AAGCACAAAG TCGGAACACC CGGTACGGGC ACGATTGCAG AAGTGAAACA CCTGCCGCCT TCACTGGTCG CGCAGTACTA TTTTGGTGAT GCTCAAGATA AGTTACGTCC TTATTTGGGC GTTGGTCTGA ATTACACGAT GTTCTTCGAT GAGAAATTTA ATGATAAGGG GACAGGGGCG GGTCTGAGCG ATCTAAGCCT GAAAAATTCC TGGGGCGTTG CTGCACAGGC TGGGCTGGAT TACAACCTGG ACAAGAATTG GCTAGTAAAC ATGTCCGTAT GGTGGATGGA TATTGATACC GATGTGAAAT TTAAAGCCGG TAACGCTCAG CAAAGTATCC ATACTAAGCT TGACCCATGG GCCTTTATGT TTGGTGTAGG TTACCGCTTT TGA
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Protein sequence | MKKTSLLLLA AAFMPALAQA HQAGDFIVRA GSATVRPAES SDNVLGLGEF QVSNNTQLGL TFSYMVTDNI GVELLAATPF KHKVGTPGTG TIAEVKHLPP SLVAQYYFGD AQDKLRPYLG VGLNYTMFFD EKFNDKGTGA GLSDLSLKNS WGVAAQAGLD YNLDKNWLVN MSVWWMDIDT DVKFKAGNAQ QSIHTKLDPW AFMFGVGYRF
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