Gene PC1_2000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2000 
Symbol 
ID8132944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp2295943 
End bp2296575 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content49% 
IMG OID644865290 
Productouter membrane protein W 
Protein accessionYP_003017577 
Protein GI253688387 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGA CATCTTTATT ATTGTTGGCA GCGGCGTTTA TGCCTGCGTT GGCACAGGCT 
CATCAAGCGG GTGATTTTAT TGTTCGGGCA GGCTCAGCAA CGGTGCGTCC TGCTGAAAGT
TCGGACAACG TGCTGGGGTT GGGGGAGTTT CAGGTTAGCA ACAATACTCA GTTGGGCCTG
ACTTTCAGCT ACATGGTGAC GGACAATATT GGGGTTGAAT TGCTCGCGGC CACCCCATTC
AAGCACAAAG TCGGAACACC CGGTACGGGC ACGATTGCAG AAGTGAAACA CCTGCCGCCT
TCACTGGTCG CGCAGTACTA TTTTGGTGAT GCTCAAGATA AGTTACGTCC TTATTTGGGC
GTTGGTCTGA ATTACACGAT GTTCTTCGAT GAGAAATTTA ATGATAAGGG GACAGGGGCG
GGTCTGAGCG ATCTAAGCCT GAAAAATTCC TGGGGCGTTG CTGCACAGGC TGGGCTGGAT
TACAACCTGG ACAAGAATTG GCTAGTAAAC ATGTCCGTAT GGTGGATGGA TATTGATACC
GATGTGAAAT TTAAAGCCGG TAACGCTCAG CAAAGTATCC ATACTAAGCT TGACCCATGG
GCCTTTATGT TTGGTGTAGG TTACCGCTTT TGA
 
Protein sequence
MKKTSLLLLA AAFMPALAQA HQAGDFIVRA GSATVRPAES SDNVLGLGEF QVSNNTQLGL 
TFSYMVTDNI GVELLAATPF KHKVGTPGTG TIAEVKHLPP SLVAQYYFGD AQDKLRPYLG
VGLNYTMFFD EKFNDKGTGA GLSDLSLKNS WGVAAQAGLD YNLDKNWLVN MSVWWMDIDT
DVKFKAGNAQ QSIHTKLDPW AFMFGVGYRF