Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1166 |
Symbol | |
ID | 8132095 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1365754 |
End bp | 1366653 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644864448 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_003016750 |
Protein GI | 253687560 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.02159 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTTAT CGATAAAACA ATTACGAGCC TTTATCGCGT TGACAGAAAC CGATAATTTC ACGCGCGCTG CTCAGAAAAT AAATCTCTCT CAGCCAGCAT TTAGTTCATT AATCGCCGGG TTGGAGGAAG AGGTCGGCTA TCGGCTATTT GATCGCGATA CACGTAAAGT GCAACTCAAC GCCGATGGCC TTCATTTCAT TGATATTGCC CGTCGGCTGG TGCAAACCCA TGATGATGCC GTCGGTGAGA TCAAGTCGTA TGCCACGGGG TACAAGGGGA AGATTGTGCT GGCGGTATTG CCGTCAATGG CGGTGGAATG GTTGCCTCAG GTGCTGGCGC AATATCACCG TGCTTATCCC AAGATTAAGG TTGAACTGCT GGATACGCAG TGGGATCGCT GCCTGAAGGC GGTGCTGGAT GGACGCGCCG ATCTGGCGCT GACAGCAGGG CAGCCGTCGC CGGGAACGTT CAGCTCTCGC ATGCTGTTTG CCGACAGTTT TTATCTGATC TGCCAGAACT CGCACCCGCT GGCGCAGCGC GACAGTGTTG ATGTGACCGA TGTGGCGCAA TACCCGTTTG TCGGGTTTTG CAAAGGCACC AGCATTCGGC AGTACACCGA TCAGCTTATC GAGCCGGAAG GTTTTAACTA CGTGCTGGAA GTGCGTCAGT TGACCACCAT GATGGGGCTG GTGGCGGCAA ATTATGGCGT GAGTATTGTG ACGGGGCTGA CGCTGTTCCA GTTTCAGCAC AAAGACATTG CGATTATCCC GTTTCGGGAT TTATCGCTGC AGCGCGGTAT CTATCTGGTG ACGGATAGGG AGCGTCAGCT TTCAGTGTGT GCGAAAGAGT TTTATGATTT TCTTCTGGAG CGGGCGGAAA GTTTTGTTCC CGCCGCGTGA
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Protein sequence | MNLSIKQLRA FIALTETDNF TRAAQKINLS QPAFSSLIAG LEEEVGYRLF DRDTRKVQLN ADGLHFIDIA RRLVQTHDDA VGEIKSYATG YKGKIVLAVL PSMAVEWLPQ VLAQYHRAYP KIKVELLDTQ WDRCLKAVLD GRADLALTAG QPSPGTFSSR MLFADSFYLI CQNSHPLAQR DSVDVTDVAQ YPFVGFCKGT SIRQYTDQLI EPEGFNYVLE VRQLTTMMGL VAANYGVSIV TGLTLFQFQH KDIAIIPFRD LSLQRGIYLV TDRERQLSVC AKEFYDFLLE RAESFVPAA
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