| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1156 |
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| Symbol | |
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| ID | 8132085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1353150 |
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| End bp | 1356089 |
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| Gene Length | 2940 bp |
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| Protein Length | 979 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644864438 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_003016740 |
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| Protein GI | 253687550 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.909327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAG CGCAGCTATT TTCATTAAAA AAGAACGTTT CGTTAAAAAG AAAAACCTTT
CGGCAATCCG TCATTGCAGC CAATATCAGT ATCGCATTGC TGATGTTGGC AGGTTGCGGC
AGTAGCGGAG GGGGTGGCGG TGAAACTGCC AGCGTCGCGC CAACGCCGAC GACACCAACA
ACCCCCACCA CTCCAACAAC ACCGGAAACG CCAACCGTAT CTGCCGTTAA AGTCGGGATT
ATTGACTCCG GTCTGGAAGC GGCTCGCCCG GAATTTAATT ACAGCAACCT GCACTTTTCA
ACGTTTGTCG GTGGTAACCC GCAAGTTAAT GATAATCAAG GCGTGAACGG GCACGGTACG
CTCGTGGCGC TGACGCTTGC AGGAATAGCA ACGGAACGTT ATTTGGGAGG CGTTGCGCCA
GACAGCGAAC TCTACATCGC ACAATCCTCG GCAGATAATC GATTTAATTA TCAAAACACC
ACGAATGCGG TGAGTTGGCT GCTCAATTCA GGCGTAAAAA TTATCAATAT GTCCTATGCT
TCGGAGGAAC GGCTCACCAG CACCGCCGAA CTGACGACTG CCCGCAATAG CTTTGACTAC
CAACTCGTTC GCAGTGACCT ACGAAACATT GTTAACGCAG AAGCGCTGAG TATCGTCGCT
ACCGGGAACA ATGCCACCTC CACACCGTCC CCCAACACAC AAATTCCACT GATCTTTGAC
GATGCCTCGC TGCAGAAAGG GATTTTGGCC GTTACCGGCT ATGTTCCCGA ATGGGTAGGC
AATGATGGCA CCACACGCCC TTCAGAACTC TATCTCTTTG ATGCCTGTGG TAATGTCGCG
GCCTATTGCA TGAGCGCACC GGGCTACGTC GATTATCCGC TGGCTAACAG CAGCACCATA
GAACGCAGTC ATGGCACCTC GTTTGCGGCT CCGCGCGTCG CTGGAGGCGC CTCGCTTGTC
AAGGCGACTT ACCCATGGAT GACGGGCTAC AACCTGCAAC AGACCTTGCT CACTACCGCG
ACCTATCACA CCGATGGCTA TCGACGATAC GACGCGGATA ATTCTTACTA TGAAACCATC
AGGGACAGTG AAGGGAATGT TACCGCCGTT ATTTTCCGTC CGGCCTATAT CACCGTCGCT
GACACCGCCA ACGGCCGTCC TTATAACGAC ACCTTTGGCT GGGGCGATCT GAACGTCGAT
AAAGCGGTGA AAGGCCCGGC GATGTTTTAT GCCGATAACT TCACCGCTCG CTTAACGGCG
GGTGACTACA CGTTTGCTAA CGATATCAGC GGTGATTACG GCCTGATTGT CAACGGCGCC
AACAATGCGG GAGGCGTTCT GCATTTAACC GGTAGTAACA CCTATAGAGG TGACACGCTG
ATTACTGCCA ACAGCCTGTT CGTTGATGGC TCAATCGCGG GTAACGCCAG CGTATCCGGC
TCCGGCACGC TGGCAGGCAA AGGACGTATT GGCGGCAATG TAAGTAACAC CGGTACCGTT
GCTACCACCG CGGAAGGCGG GCTGACCGTC GCAGGCAATT ACACGCAGGG CAGTACCGGC
CTGCTGAGCG TAACGTTAGC CAATCCGTTC ACCGTTGAAG GCCGCGCGGC ACTGGATGGC
GGGTTACGCG TTGGTCCCCC CAGCAACTCC TATATCGTTC AGGCACAAGA AACACTACTA
CACAGTAATC AGGGGGTCAG CGGCACCTTT AGTAAGGTCG ATCTCGGCCT GTTCCTGACC
GGCAACCTAA CCTACGGCAG TAACGATGTG ATCGGTGCAT TTAGCCGCCT CAACACGGTA
GACGCAGTTA CCAACAGCGG TTTAAGCAGT GTTGCACAGT TGCAAACGGC AGCCAATATC
GAGTCAGCAT TACAGGTCGC TGACCGTTGG TCTGCACAAT CGTCAACGTC CGCACAGCAA
TCTGGTTTAC TGGCGAAGGC CGCTGCGTTT CAACAGTTAG GCAGCGCGAG CGCCGCCGCC
GTTGCGCTGG ATTCATTGTC TGGTCAGGCG CACGCGTCCA GCAACGCAAT CCTGTTTAAC
AGCCTGGATT ATCAGAATCA ATTGCTGAAC AACCGTCTGG ATTTATTGGG AAGAGAGAAA
AGCTACGGCC TGTGGATTGA GATGGGCAAG CTGCGCGGTG ACCTGAAACA GTCCGGCTAT
CTGGGCAGCC ATTACGACAT CACGCTAACC GCCATTGGCA CGGATACCGA CTTCGACACG
CCGGGATTAC GCGCCGGGAT TGCCTATACC AACAGTCAGA TCAAAGCCGA CTACGACGGT
AGTGGCGGCA GCAGTGAAAA TGAGCTGCAC GGGGTGATGA GCTACGCCCG TTATAATCTC
ACGCCAGAAT GGTACGTTCA GGGTAATCTG AGCTATCAGC ACGGCCGCGA TAAGCTGAAG
CGTTCTATCC TGCTAGGCAA TGTCGAGGCC GTTTCCAGCA ACACCTCAAG CGATAGCTGG
CAGGGTCTGC TCAAAACGGG CTACGATCTG GCGCTCAACG ATATCTTTAG CGTGCAGCCC
TATGCCGGGC TCAAATACAG CTACCTGTCC ACCGGCAGCT TTACGGACAC CGGTAGCGCG
TTCGGCCTGA CGGGAGAAGG CAACGACTAT TCCCGTACCG TTGGCCTGAC GGGGGTGAAC
CTGCGAGCGC TGTTGCAATG GAATCAGGGA TGGTGGAGCA GCGTCGGCCT TAGCGGAGAA
TATCAACACG CGTTTACCAA CCCGTCGCTC GACGTTTATG CACGCTGGAG CGGGCTGGGC
CGTGAAGGAG AGCGCCTTGA TATTCCGGGC ATTCGACTGG ACAAAGACTC GCAGTGGGCA
GGCGTGAGGC TGGACGTGGG TAAAGCCGCC GATGCCCGTT TCTTCCTGCG TGCTGACAAA
CACTTTGCCG ATCGCGGTAA CGAAGAAGTA CTGCGCGGCG GCGTTGACGT TTCCTTCTGA
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| Protein sequence | MTAAQLFSLK KNVSLKRKTF RQSVIAANIS IALLMLAGCG SSGGGGGETA SVAPTPTTPT
TPTTPTTPET PTVSAVKVGI IDSGLEAARP EFNYSNLHFS TFVGGNPQVN DNQGVNGHGT
LVALTLAGIA TERYLGGVAP DSELYIAQSS ADNRFNYQNT TNAVSWLLNS GVKIINMSYA
SEERLTSTAE LTTARNSFDY QLVRSDLRNI VNAEALSIVA TGNNATSTPS PNTQIPLIFD
DASLQKGILA VTGYVPEWVG NDGTTRPSEL YLFDACGNVA AYCMSAPGYV DYPLANSSTI
ERSHGTSFAA PRVAGGASLV KATYPWMTGY NLQQTLLTTA TYHTDGYRRY DADNSYYETI
RDSEGNVTAV IFRPAYITVA DTANGRPYND TFGWGDLNVD KAVKGPAMFY ADNFTARLTA
GDYTFANDIS GDYGLIVNGA NNAGGVLHLT GSNTYRGDTL ITANSLFVDG SIAGNASVSG
SGTLAGKGRI GGNVSNTGTV ATTAEGGLTV AGNYTQGSTG LLSVTLANPF TVEGRAALDG
GLRVGPPSNS YIVQAQETLL HSNQGVSGTF SKVDLGLFLT GNLTYGSNDV IGAFSRLNTV
DAVTNSGLSS VAQLQTAANI ESALQVADRW SAQSSTSAQQ SGLLAKAAAF QQLGSASAAA
VALDSLSGQA HASSNAILFN SLDYQNQLLN NRLDLLGREK SYGLWIEMGK LRGDLKQSGY
LGSHYDITLT AIGTDTDFDT PGLRAGIAYT NSQIKADYDG SGGSSENELH GVMSYARYNL
TPEWYVQGNL SYQHGRDKLK RSILLGNVEA VSSNTSSDSW QGLLKTGYDL ALNDIFSVQP
YAGLKYSYLS TGSFTDTGSA FGLTGEGNDY SRTVGLTGVN LRALLQWNQG WWSSVGLSGE
YQHAFTNPSL DVYARWSGLG REGERLDIPG IRLDKDSQWA GVRLDVGKAA DARFFLRADK
HFADRGNEEV LRGGVDVSF
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