Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0963 |
Symbol | |
ID | 8131892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1113392 |
End bp | 1114090 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644864247 |
Product | lipoprotein involved with copper homeostasis and adhesion |
Protein accession | YP_003016549 |
Protein GI | 253687359 |
COG category | [M] Cell wall/membrane/envelope biogenesis [P] Inorganic ion transport and metabolism |
COG ID | [COG3015] Uncharacterized lipoprotein NlpE involved in copper resistance |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.316289 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATGAAAA AACTGGCTAT CGGTGTGCTG TTGATTGCAG GGATTTCTGG GTTGATCGGG TGTCATACCC GATCACAAGT TCAGGAAGAG CCCCTTAAAC CAATGGCGCA AAGTTATCGT GGTGTTTTAC CCTGTGCGGA CTGCGGGGGG ATTGATACGT CACTGTTTTT GGAAAAAGAT GGCACGTTTG TTCTGCGCGA GCAATACCAA ACAACGCGAG AGGGTAACAA CACGTTTGCC TCCTATGGGC AGTGGCGCCG TACTGCGGAT AAGCTGGTGT TGACGGATAG CGCGGGTGAA AAACGTTACT TCCGCCCGGT CGACAACTCA CTTGAAATGC TGGATCAGCA AGGTTTGCCC ATTAACTCAT CCCTTCCTCG TCAACTGACG GCAACCGAGC AGCCTTTGCC AAACACGCCG ATGGTAATGA AGGGAATGTA CCGCTATATG GCGGACGTCG CGACCTTCTC TGATTGTGCG ACAGGAAAGA CCTTTGTGAT GGATGATAGC GCGGAGTTGG AGAGACAATA TTTTCGCGTG AGAGATAAAG CCGCTGAACC GGTATTACTT GTTCTGACTG CGCACTTTGC CGTGATTCCG TCGATGGAAG AAGGGCAGAT GGTGAAGGCT GTGGTCCCTA ACGGCAGCGA TAAAGCACGT ATGAGAGCAC GAGCAAACTG CGATACACAA ATAGACTAA
|
Protein sequence | MMKKLAIGVL LIAGISGLIG CHTRSQVQEE PLKPMAQSYR GVLPCADCGG IDTSLFLEKD GTFVLREQYQ TTREGNNTFA SYGQWRRTAD KLVLTDSAGE KRYFRPVDNS LEMLDQQGLP INSSLPRQLT ATEQPLPNTP MVMKGMYRYM ADVATFSDCA TGKTFVMDDS AELERQYFRV RDKAAEPVLL VLTAHFAVIP SMEEGQMVKA VVPNGSDKAR MRARANCDTQ ID
|
| |