Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0701 |
Symbol | |
ID | 8131625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 826853 |
End bp | 828289 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644863986 |
Product | sugar (Glycoside-Pentoside-Hexuronide) transporter |
Protein accession | YP_003016292 |
Protein GI | 253687102 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.657348 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCAACA ATAATAAGCT GAGCGTTGCG GAGAAAATCG GCTTTGGCAT GGGCGATGCC GCCTGTGGCA TCGTCTATTC TTCCGTAACC ATGTTTCTTA CCTACTTTTA TACGGATATC TATGGCATCT CCGCCGCTGC GGTAGGGGTT ATGTTTCTGG TGACGCGCGT GCTGGACGCC ATCGTTGATC CTCTGATTGG CATCATTGCC GACCGCACCA AAACCCGCTG GGGGCATTTC CGCCCGTGGC TGGTCTGGTT TGCCGTCCCC TACGCCGTGA TTGCCGTACT GGCCTACACC ACGCCGGAAC TGAACGGTAC GGGTAAACTG GTTTACGCCT ACATCACCTA CACGCTGCTG ATGCTGTTCT ATACGTTTAT CAACATCCCT TACTGTTCGC TCGGCGGTGT CATCACCAGC GATGAAAAGG ACAGGATTTC CGCGCAGTCT TACCGCTTTA CCATCTCCTC AATGGCTGGG CTACTCGTAT CGGTCGGCAC GCTGTGGCTG GTCGACTGGA TTGGCGGTAC CAATAAGCAA TTGGGCTATC AGGGCACGAT GATGATCATG GGCTGTCTGG CCGTCGTGAT GCTGTTTTTT TGCTTTTTCA CCACTCAGGA ACGCATCAAT CCTGCGGTGG ATAAAAATCA GAACGTCTGG GACGATGTCA GAAACCTGCT GAGCAACGAT CAGTGGCGCA TCGTGGCTAT CATTACGTTC TTTTCCAGCA TGGCGGGTGT CATGCGCGGT GCGGCGACGC TGTATTACGC AACCTACCTG ATGGTCGGGC CAGAGCAAGG CAGCGCCGCC GGAACGGCAA TGAAATCCGC CTTTATTACC ACCAGCGTCG TCGGCACTAT TATTGGTGCA ATGATGGCGG GCTACTTTGG CAAGCGATTC AGCAGCATAA GCCTGTTCAA GAACATTAAC CTGCTGCTGG TGTTTGTCGG GGTCATCCTG TTTATGGTGC CGCCACAGTG GCTGGCGGTC GTCTTCCCGC TCTATTTTTT GATCGGCTTC TTCCACCAAA TGTATCAACC GTTCAAATGG AACATGATGG CGAATGCCGC CGATTACGGC GAATGGAAAA CAGGCCGTCG CATTACTGGT CTGTCATTCT CCGGCAACCT ATTCGCACTG AAACTGGGTA TGGCGGTTGC AGGTGCACTG GTCGGCTTTT CACTCGGCTG GTTTGGCTAT GTTGCAGGTT CCCCCACACA AACACCGCTC GCCACTGCCG GTATTATCGG CTTGCTGAGC ATCGGGCCAT CACTCTCCTA TCTGGTTCTG TATTGGCTGG TACGTTTTTA CAAGCTGGAC GATAAGACGA TGGAAAACAT TCAGGCTGAT TTGGCAAAAC GTCACAGCAC ATCTGACCGC GTGCCGGAAA GCGAGCTTCC TGTCGATCAA GGCCTGACGC CAAAAGGTGC AGCCTGA
|
Protein sequence | MTNNNKLSVA EKIGFGMGDA ACGIVYSSVT MFLTYFYTDI YGISAAAVGV MFLVTRVLDA IVDPLIGIIA DRTKTRWGHF RPWLVWFAVP YAVIAVLAYT TPELNGTGKL VYAYITYTLL MLFYTFINIP YCSLGGVITS DEKDRISAQS YRFTISSMAG LLVSVGTLWL VDWIGGTNKQ LGYQGTMMIM GCLAVVMLFF CFFTTQERIN PAVDKNQNVW DDVRNLLSND QWRIVAIITF FSSMAGVMRG AATLYYATYL MVGPEQGSAA GTAMKSAFIT TSVVGTIIGA MMAGYFGKRF SSISLFKNIN LLLVFVGVIL FMVPPQWLAV VFPLYFLIGF FHQMYQPFKW NMMANAADYG EWKTGRRITG LSFSGNLFAL KLGMAVAGAL VGFSLGWFGY VAGSPTQTPL ATAGIIGLLS IGPSLSYLVL YWLVRFYKLD DKTMENIQAD LAKRHSTSDR VPESELPVDQ GLTPKGAA
|
| |