Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4002 |
Symbol | |
ID | 8021690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 582863 |
End bp | 583798 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644832787 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_002983927 |
Protein GI | 241665568 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.474244 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCACC GCATCGCTGT GCTCATTTTT CCGGACTTCC AACTGCTCGA CGCTGCGGGG CCGGTGGCGG CGTTTGAAGT CGCCAGCCGG TATCGGGACG ACCACTACGC GCTGCGCACG GTTGCCGCGC AGGCCGGCCT TGTACGCAGT TCTTCCGGGG CCCGCTGGGA TGCCGACGCC CTGCCCCCGG CCAGCCAGGT CGACACGCTG CTCATTGCCG GCGGCGACGG CGTGGATGCG GCCATGGCGG ATGCACGCAC GCGCCGCTTC GTGCAGCGTT GCGCAGCCCG CGGGGCGCGC GTCGCCAGCG TGTGTTCGGG CAGCTTGCTG CTGGCCGCCA CGGGCTTGCT GAACGGCCGA CGCGCCACCA CCCACTGGAG CCGCAGCGAG CAGTTCGCGC GCGCGTTCCC GCAGGTGCAG CTCGAACCGG ACCACATCTA CGTAAACGAC GGCCCCATCT GGACCAGCGC CGGCATCAGC GCCGGCATCG ACCTGGCGCT CGCGCTCATC GCCGACGACC TGGGCGAGCG CCTGGCACGC GCGGTGGCGC GGCAGTTGGT CGTGTACTAC CGCCGGCCGG GCGGACAGTC GCAGTTTTCA GCGCTAAATG AGATGGATTC GGCACGCGGC CGCTTCAAGC CGCTGCTCGA CCACGTGCGG CGCAACCTGG GCGCACCGCA CCGCGTGGGC GATCTGGCCG AGCACGCCTG CATGAGCCCG CGCCATTTCG CCCGCGCATT CCAGGTCGAA ACCGGTCTCA CCCCTGCAAA GGCCGTGGAA AAATTGCGCG TTGAGGCGGC CCGCGCCGCG TTGGAAAGCG GGGCCGTCTC CATGCAGCGG GTGGCCACCG AGTGCGGATT TGGCGATACC GAGCGCATGC GCCGCAGTTT TCAGCGCTTG CTGGGCGTGC CGCCGTCTTC GTTGCGCGCA CGGTAA
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Protein sequence | MAHRIAVLIF PDFQLLDAAG PVAAFEVASR YRDDHYALRT VAAQAGLVRS SSGARWDADA LPPASQVDTL LIAGGDGVDA AMADARTRRF VQRCAARGAR VASVCSGSLL LAATGLLNGR RATTHWSRSE QFARAFPQVQ LEPDHIYVND GPIWTSAGIS AGIDLALALI ADDLGERLAR AVARQLVVYY RRPGGQSQFS ALNEMDSARG RFKPLLDHVR RNLGAPHRVG DLAEHACMSP RHFARAFQVE TGLTPAKAVE KLRVEAARAA LESGAVSMQR VATECGFGDT ERMRRSFQRL LGVPPSSLRA R
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