Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3964 |
Symbol | |
ID | 8021652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 541766 |
End bp | 542638 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644832752 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002983892 |
Protein GI | 241665533 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00150668 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.033592 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCCGAG AACTCAAAAC CTTCATTGCG GTTGCGCGGC ACGGCACGTT CGCCGGCGCG GGCGAGCGCA TCGGCCTCAC GCAATCTGCC GTCAGCGCGC AGATTCAGCG CCTGGAAGCA TCGCTGGGCT TCCAGTTGTT CGACCGCACC GGCCGCTCGG CCACGCTCAA CGCGGCCGGG CGCGATGCAC TCGCGCAGGC CGAACAGATC GTCACCCTGT ACGACCGCCT GGGCGACCAG GCCAGCGGCA ACGAGCAGCG CGGCCTTGTG CGCATCGGCG CGATCGCCTC GGTGCAGGCG TCCTTCCTGA TCGATGCATT GGTGCGGTTC CGGCTGGAGT TTCCGCATTG CCGCACGCGC ATCGTGCCCG GCGTGTCGCT GGATCTGCTC GGCCTGGTGG ATGCAGGTGA GATCGACATG GCCGTGCTGA TTCGCCCGCC GTTTGGCGTG CCGGCGGATC TTGAATGGCG CACGCTCGTT GCCGAACCGT TCGTGCTGCT CGTGCCCGAC AGCGTGCCGG GTGATGACTG GCGCGTGCTG CTTGGACACC AGCCTTTCAT TCGTTACGAC CGCCGCTCGT TCGGAGGCCG CCGCGTCGAC CAATTCCTGC GCGACCAGCA CATCACCACG CATGACGTGA TCGAGCTGGA CGAGCTGCAA GGCATGACGC AGCTCGTCGC GCGCGGACAG GGCGTGGCGC TTGCACCGCA GACTGCCGCC CAGGGCGCAT GGCCGCCCGG CGTGCGGGCC ATCGACCTGG GCAACGACAC GTTCACCCGC GAGATCGGCC TGATCGAGCG CCCGCGGCAT AGCCGCCAGC CCATCGCCGG CCGCCTGGCC GATTGCATCG ACGAGGCCGC CCGCGCGCCA TGA
|
Protein sequence | MLRELKTFIA VARHGTFAGA GERIGLTQSA VSAQIQRLEA SLGFQLFDRT GRSATLNAAG RDALAQAEQI VTLYDRLGDQ ASGNEQRGLV RIGAIASVQA SFLIDALVRF RLEFPHCRTR IVPGVSLDLL GLVDAGEIDM AVLIRPPFGV PADLEWRTLV AEPFVLLVPD SVPGDDWRVL LGHQPFIRYD RRSFGGRRVD QFLRDQHITT HDVIELDELQ GMTQLVARGQ GVALAPQTAA QGAWPPGVRA IDLGNDTFTR EIGLIERPRH SRQPIAGRLA DCIDEAARAP
|
| |