| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1654 |
|---|
| Symbol | |
|---|
| ID | 8019306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1757587 |
|---|
| End bp | 1758132 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644830435 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_002981609 |
|---|
| Protein GI | 241663249 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4566] Response regulator |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00914552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0273292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCC TCGACTACCA GACTGCGTTC CAGCTTGCCC CTGTGGGCAT GGTGATGTCC
CGCGAGCGGG TGATGCTCGA CGTCAACGAC GAAGCCGCTC GCATCTTCGG TCACCCGCGT
ACGACCATGA TGGGGCAATC GTTCGAACTG CTCTATCCGA CGCATGACGA ATACGAACGC
ACCGGCGCAC GCATCATCCC CGTCATGAAT GCGCGCGGCA GCTATTCCGA CGAGCGCATC
ATGAAGCGCG CCAACGGCGA ATTGTTCTGG TGCCACGTCA CAGGCCGCGC GCTGGACCGT
GCCAAACCGC TGGGCGAAGG CATCTGGACG TTCGAGGATC TGTCAGCGCA TCGCCCCGTT
ACAGCAGCGC TCACGCCGCG CGAACGCGAC ATCGCCGCGC AGCTTGTTGA AGGCAAGACC
AGCAAGCAGA TCGGCAAGCA GTTGGAGATC AGCCCGCGCA CGGTGGAAAT CTACCGCGCG
CGGCTAATGA AGAAGTACGC TGCCAACACC TCGCTCGAAC TTGTGCAGCG GCTGATGGGG
CACTGA
|
|---|
| Protein sequence | MPALDYQTAF QLAPVGMVMS RERVMLDVND EAARIFGHPR TTMMGQSFEL LYPTHDEYER
TGARIIPVMN ARGSYSDERI MKRANGELFW CHVTGRALDR AKPLGEGIWT FEDLSAHRPV
TAALTPRERD IAAQLVEGKT SKQIGKQLEI SPRTVEIYRA RLMKKYAANT SLELVQRLMG
H
|
|---|
| |