Gene Vapar_6279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6279 
Symbol 
ID7975495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp1016131 
End bp1017222 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content70% 
IMG OID644796849 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_002948108 
Protein GI239820923 
COG category[E] Amino acid transport and metabolism
[C] Energy production and conversion 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.72683e-06 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAGA ACTACCGCAT CGCCGTCCTG CCGGGAGACG GCATCGGCAC CGAAGTCATG 
CACGCGGCGC AGGCCGTACT GGAAGCCGTG CAGCCGCGCG TCGGCCGTGC GCTGGCACTC
GAATGGCTGC CGGCCGGCGC ACAGCACTAT CTCGACAGCG GCGTCGCGCT GCCCGAGACC
ACGCTGCGCC GCTGTGAGAG CGCGGACGCC ATCCTGTTCG GTGCGATGGG CCTGCCGCAC
GTGCGCGGCG CCGACGGCAC CGAGATCATT CCGCAGCTCG ACCTGCGCAT GCACTTCGAC
CTGTATGCCG GCGTGCGGCC GATCCGCACC TTCCGCGGCC TGCCCACGCC GTTGTCGAAC
CCTAAGGCCG AGCACATCGA CCTGGTGCTG GTGCGCGAGA GCACCGAAGG CCTGTTCTAT
GCCCGCGGCC GCGGCGACGT ACGCGGTGAC CAGGAAGTGT TCGACACCAT GCGTATCACG
CGCCACGGCA CGACACGCAT CTGCGAATTC GCCTTCCGCC TGGCCGCACG CCGGGCCGAG
CGGCTGGGCC GCGCAGGCCG CGTGACCAAC GTGGACAAGG CCAACGTCTT CGCCTCGATG
GCCTTCTTCC GCAAGGTGTT CGAGGAAGTC GCGGCGCGCC ATCCGGCGGT GGCGGCCGAC
AGCGGCTATG TCGATGCGAT GGCACTCAAC CTGGTGATGA AGCCGTGGAC CTACGACGTG
CTGGTCACCG AGAACATGTT CGGCGACATC CTGTCGGACC TCATTGCCGC GCTGGTCGGC
GGCATGGGCA TGGCGCCCTC GGGCGACATC GGCGACAGGC ACGCACTGTT CCAGCCGGCG
CATGGCACCG CGCCCGACAT TGCGGGCCAG GGCAAGGCGA ACCCGACCGC GATGCTGCTG
TCGGCCGCCA TGATGCTCGA GTGGCTGGCT GAGCGCAGCG GTGACACCGC ACTGGCCGAC
GGCGCGGCGC TGATCGAACG CGCGGTCGAG CAGGTGTTCG CCACCGGCCA GGTGCGGCCG
ATGGAGTTCG GCGGCATGCA CGGCACGGCC GACATCACGC GCGCGGCCAC CGACGCCCTG
CGCGCGGCCT AG
 
Protein sequence
MEKNYRIAVL PGDGIGTEVM HAAQAVLEAV QPRVGRALAL EWLPAGAQHY LDSGVALPET 
TLRRCESADA ILFGAMGLPH VRGADGTEII PQLDLRMHFD LYAGVRPIRT FRGLPTPLSN
PKAEHIDLVL VRESTEGLFY ARGRGDVRGD QEVFDTMRIT RHGTTRICEF AFRLAARRAE
RLGRAGRVTN VDKANVFASM AFFRKVFEEV AARHPAVAAD SGYVDAMALN LVMKPWTYDV
LVTENMFGDI LSDLIAALVG GMGMAPSGDI GDRHALFQPA HGTAPDIAGQ GKANPTAMLL
SAAMMLEWLA ERSGDTALAD GAALIERAVE QVFATGQVRP MEFGGMHGTA DITRAATDAL
RAA