| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6028 |
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| Symbol | |
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| ID | 7975313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 751615 |
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| End bp | 753255 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796588 |
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| Product | transcriptional regulator, IclR family |
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| Protein accession | YP_002947862 |
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| Protein GI | 239820677 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3386] Gluconolactonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0187184 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTGC TGAACATCGT GTCGGCACGC CGCACGCCGA TGACCTTCAC CGAACTGCTG
CGCGCCTGCG ACCTGCCCAA GGCCACGCTG CACCGCATCC TCGCGACGCT GGTGCGCGAA
GGGCTGCTGC GGCACAACGC CTACGACAAG ACCTTCCAGC TCGGGCTGCG CCTGCTCGAG
CTGGCACACG ACGTATGGAG CGAGTTCGAT CTGCGCGTCG CGGCCCAGGA CGAGCTCGCG
CGGCTGCGCG ATGCGCTGGG CGAGACCGTG GAACTCACGG TGCTCGATGG CAGGTGCGTA
GTCATCCTGG CCAGCGAGCC GGGGGACGAG GCGTCGGGCG CACGCTCCGC GGTCGGGCAG
CGCTTGCCGG TGCATGCGTC CGCGGCGGGC AAGGCGATTG CAGCGAACCT CGATCCCTCG
GGCCAGCGGC GGCTGATCCA GGCGCTCGAT CTGGAGCGCT TCACGCCGCG CACGATCGTG
GCGCCGACCG AGCTGCATGC CGAATTCGAC CTGGTGCGCG CACGCGGCTA TGCGATCGAG
CAGGGCGAGC GCGCGCCGGA TCGCGCGGCG GTGGCCGCGC CGATCTTCGA CTACGAGGGC
CGCCCGATCG GTGCCGTCGC CATCAGCACC GATGCGAGCC GGCTGGACGC GGCGCGCGCC
CACACCCTGT CGTCCGCGCT GATGGGCGCC GCCCGCAGCA TCACCCACAG CGCGGCGGGC
AAGGCCATGT CCATTGCCAC CCAGTCGCCG CCCGAAACCA CCTCGTCCGT CGAAGTGCGC
TGCGTGAGCG AAGTGCGTTC GCTGCTGGGC GAAGGACCGA TGTGGTCGCC TCGCGACAAT
GCGCTCTACT GGGTCGACAT CCTCACGCCC TCGGTGCACC GCTACGACGC CGCGACGGGC
GTGGACACCG AGACGCCGCT CGGAACCATG GCGAGCCTGG TCGTGCCCAA GGCCAGCGGC
GGCCTGCTGG TTGCAACGCC AGGGGGGATC ATGGCGCTCG ATCTCTCCAC ACGGCGGCTG
ACCGCCTTCT GCCACCCCGA AGTGGGCCGC ACCAATGTTC GCTACAACGA CGGCAAGTGC
GACCGGCGCG GGCGGCTGTG GGTCGGTTCG ATGGACATGG CCGCGGCGGC CAACCGGGGC
CACCTGTTCT GCGTCGAGGC GAACGGCAGC TGGAAGCAGG TCGACACCGG GTTCACGGTG
CCCAACGGCA TTGGCTGGAG CCCAGACAAC AAGACCATGT ACGTCACCGA CACGTACCGC
CAGACCATCT ACCGCTACGA CTTCGACCTC GCCTGCGGAA CCGTCGGCAA CCGGCGCCCG
CTGATCACCA TCGCGGCCTC CGACGGCAAG CCCGACGGCC TGACGGTCGA CGACCAGGGC
TGCCTGTGGG TCGCCCTCTG GGACGCCTGG CAGATCGCGC GCTTCTCGCC GGAAGGCCAG
CTCATGCAGC GCCTGCGCGT GCCGGTTCCG CGTCCCACCA GCTGCTGCTT CGGTGGCGAC
AACCTGGACA CGCTGTTTGT CACGAGTGCC TCCTTGCGCC TGAGCGAGGA GCAACTGGCG
ACCGCGCCGC TGTCCGGTTC GTTGTTCGCC ATTCAGCTGC CGGATGCGCG GGGCTTGCCC
GAGGCGGCAT TCGCTGGTTG A
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| Protein sequence | MNLLNIVSAR RTPMTFTELL RACDLPKATL HRILATLVRE GLLRHNAYDK TFQLGLRLLE
LAHDVWSEFD LRVAAQDELA RLRDALGETV ELTVLDGRCV VILASEPGDE ASGARSAVGQ
RLPVHASAAG KAIAANLDPS GQRRLIQALD LERFTPRTIV APTELHAEFD LVRARGYAIE
QGERAPDRAA VAAPIFDYEG RPIGAVAIST DASRLDAARA HTLSSALMGA ARSITHSAAG
KAMSIATQSP PETTSSVEVR CVSEVRSLLG EGPMWSPRDN ALYWVDILTP SVHRYDAATG
VDTETPLGTM ASLVVPKASG GLLVATPGGI MALDLSTRRL TAFCHPEVGR TNVRYNDGKC
DRRGRLWVGS MDMAAAANRG HLFCVEANGS WKQVDTGFTV PNGIGWSPDN KTMYVTDTYR
QTIYRYDFDL ACGTVGNRRP LITIAASDGK PDGLTVDDQG CLWVALWDAW QIARFSPEGQ
LMQRLRVPVP RPTSCCFGGD NLDTLFVTSA SLRLSEEQLA TAPLSGSLFA IQLPDARGLP
EAAFAG
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