Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5927 |
Symbol | |
ID | 7974966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 630334 |
End bp | 631629 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644796492 |
Product | porin |
Protein accession | YP_002947766 |
Protein GI | 239820581 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.186679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGAAGA AAACCATCGC GGCCGTGGTT GTGCTGTCCT GCGCCGGTGC GGCCAGCGCG CAATCGTCCG TCACCTTGTT CGGAGCGCTC GATGCGGGTG TCAGCTACTA CAGCACGACG AGTTCCTTCT ACAACAACAC CGGCCGCCTG CTCCTGCCAG GGGCCGACAT CAAGCGCAGC CAGACCACGC TCTCCAACAG CGGCACCACG CCGAGCCGTC TGGGATTCCG CGGCACCGAG GACCTGGGCG GCGGCCTGGC CGCGAGCTTC TGGATGGAAG CCGGCCTGGC GAACGACTCG GGCACGGGTG CCGGGCCGGG CAGCGTCATC GTCTTCAATC GCCGCTCCAC CGTGAGCCTT TCAGGTCCGT TCGGCGAGGT CCGCCTGGGC CGGGACTACA CACCCACCTA CTGGAACGAC GCCGTCTTCA GCCCGTTCAG CACGCTGGGC GTGGGCACCA ACGTGGTGTC GAGCGTCGGC AGCAACCTGC AGATCGCGAA GGGACCCGGC TCGGCGGTCT CGGCGACGGA CAACTACATG CGCACCAGCA ACAGCATCGG TTACTTCTTG CCGCCAGGGC TGGGCGGCTT CTATGGCCAG GTGCAGTACG CGCTGCACGA GAACGCAAGC CAGAGCAATG TGCCAGGCAC GCCGAGCGCG AAAGGGCGTT TTGCCGGCGG CCGGCTGGGT TATGCCGCCG AAGCGCTCGA CGTGGCACTG GCCTATGGCG AAAGCACCGC TGCGGATGCG ACGGCACTGG ACGCCGCGGG GGTGGCGACC GGCGCCCGGC TGCGCGAGAA GATCAAGACC CTCAGTCTCG GTGCCTCCTA CAACTTCGGG GCTTTCAAGC TCTTCGGGGA ACTGTCGCAG GTGCGCGATG TTTCCGTCTC GACGGTACCT GTGCCCGTCC TGGGCGCGCT CAGCACGCGC GAGACCGACA AGTACAAGGG CGGCCTGCTC GGCGTGACGG TGCCTGCGGG CGCCGGTCTG ATCAAGGGCT CTTACTCCTG GGTGAAGTTC GACAATGACC TGGGGGCTGC TGCCAGCCCC TTTGCCGCCG ACCGCGATGC CTCGGTTCGC AAGCTCGCCA TCGGCTATGA GCACAACCTC TTGAAGCGCA CCGCGCTGTA CGCCACGGTG GCGCGCATCC GCATCAAGAA CGGACAGAAC AACCCGGCCA TCATGGCTGC GAGTACCGGC GGCACGGCAG GCTATCTTTC CAGCGGTGCT GGTGTGTCGG GCTATGCGCC TCGCGGCGCG ATGGGCTACG ACTTCGGCAT CAGGCACGTG TTCTAG
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Protein sequence | MKKKTIAAVV VLSCAGAASA QSSVTLFGAL DAGVSYYSTT SSFYNNTGRL LLPGADIKRS QTTLSNSGTT PSRLGFRGTE DLGGGLAASF WMEAGLANDS GTGAGPGSVI VFNRRSTVSL SGPFGEVRLG RDYTPTYWND AVFSPFSTLG VGTNVVSSVG SNLQIAKGPG SAVSATDNYM RTSNSIGYFL PPGLGGFYGQ VQYALHENAS QSNVPGTPSA KGRFAGGRLG YAAEALDVAL AYGESTAADA TALDAAGVAT GARLREKIKT LSLGASYNFG AFKLFGELSQ VRDVSVSTVP VPVLGALSTR ETDKYKGGLL GVTVPAGAGL IKGSYSWVKF DNDLGAAASP FAADRDASVR KLAIGYEHNL LKRTALYATV ARIRIKNGQN NPAIMAASTG GTAGYLSSGA GVSGYAPRGA MGYDFGIRHV F
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