| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5890 |
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| Symbol | |
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| ID | 7975941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 602473 |
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| End bp | 603549 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796466 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_002947740 |
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| Protein GI | 239820555 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.654987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAATT GCCTTTCAAG CATCGTGGGC GCAGCTGCTC TTGCCTTTGT TGCGTCCGGC
GCACAGGGCC AGTCCATCAT CTACGGTCTG GTGGATGCGT GCGTGGCCCG ATCGAACATC
GACGGAGCGC ATAGCACGCG TGTCGGGTCG GGCTGTCAAA GTGGCAGCCG GTTGGGATTT
CGGGGCTCCG AGAACCTGGG CGGAGGTCTA ACGGCCGGCT TCCAACTGGA GAACGGCTTC
AACGTGGACG ACGGCTCTTT TGGCCAAGGC GGCCGGATGT TCGGTCGCAA GGCCGTCCTC
AGCCTATCCA GCACCACATT CGGCACTATC GAACTGGGCC GCGACTACGC GCCAACCTTC
TATGCTCTGG CGCCGATCGA TCCGACGGCC TTCGGCATCG GCACGGTCAG CAGCACCATG
TGGACCGGCT CGAACCCTAC CACCGTGGCG CGCAACGACA ACGCCGTCAA TTACATCTCC
CCCGCGCTCG GCCCCGTCAT CGTGCGTGTG CAATATTCAT TCGGCGAACA GCCGGCCCCG
GCGAGCTCCG GGGCCCGATC CACCCTGGGC TTCAACATGA TCTACCGCAG TGGCGCGTGG
CTGGCCAGCC TGGCGCATGC GCGCCACGCC AATGCCACCG ACAGCGCACA CGACCGCGCG
TCGACCGCGG GGCTGAGCTA CACCATCGGA GGACTCATCC TCTCGGGCGC GTTCCAGGCC
GGGCGATGGG AGGGTAGCCG GACAGTCGCT GCTCCTTCCA GCGCGACCAG CATCTTCAGC
CGCCACTACC GCAGTTACAT GCTCGGTGCG TCGTACCAGG TCCTGCCGCT GCTGCGCGCA
CTGGTATCCA TCAAGCACTA CGACGACCGG ACGGCCAGGG ACTTCGATGC GCACCAGGTC
ACCGCAACGG CTATTTACGC TCTGTCAAAG CGCACCGACC TGTATGCGTC GTACAGCTGG
CTGAAGAACG TAGCGAGCAG CAGCTACGAC ATCAGCGACG CCACGACCCG GTACAGCGGC
GTGCGTGCCG GCGCCAACAC TTCGTTGATC GCCATGGGCG TGCGCCACGT TTTTTGA
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| Protein sequence | MKNCLSSIVG AAALAFVASG AQGQSIIYGL VDACVARSNI DGAHSTRVGS GCQSGSRLGF
RGSENLGGGL TAGFQLENGF NVDDGSFGQG GRMFGRKAVL SLSSTTFGTI ELGRDYAPTF
YALAPIDPTA FGIGTVSSTM WTGSNPTTVA RNDNAVNYIS PALGPVIVRV QYSFGEQPAP
ASSGARSTLG FNMIYRSGAW LASLAHARHA NATDSAHDRA STAGLSYTIG GLILSGAFQA
GRWEGSRTVA APSSATSIFS RHYRSYMLGA SYQVLPLLRA LVSIKHYDDR TARDFDAHQV
TATAIYALSK RTDLYASYSW LKNVASSSYD ISDATTRYSG VRAGANTSLI AMGVRHVF
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