Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5701 |
Symbol | |
ID | 7975754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 415824 |
End bp | 416660 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644796283 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002947557 |
Protein GI | 239820372 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACCA ATCGAATGGC GTCGCTGCGC CGGCGCTGGC CGCTCGCGCG CTGGGCCGTG CCGCTCGTCC TGTTCGCGAT GCTGCTGCCG TTCCTGTGGC TGCTGCAGAT GTCGTTCAAG CCGACGCCGC TGATCCTCGA GTTTCCGCCG CGGGTCTTCT TCATGCCCAC GCTGGAGCAC TACGTGGGGC TCTGGCAGGC CGGCTTTCCG GAGTCCTTCG CCAACAGCCT GGTCACGAGC ATCGTGTCGA CGCTGCTCGC GCTGGTGTTC GGCATTCCGG CGGCCTATGC ACTCTCGCGC TGGACCGGGC GCGGGCGCTT CGGTCTCGGC CTGGGCATCC TGCTGACGCG CATGGCGCCG CCGATCGCCT TCACGATCCC GTTCTTCCTG GCGTATCGGT ATCTCGGCCT GCTCGACACC CGCACCGGCC TGATCCTCAT CTACATGACC TTCAACCTGC CGCTGGTGAT CTGGATGATG CAGCCCTTCT TCGACGCGGT GCCGGCTTCG CTCGAAGAGG CGGCGCTGAT GGACGGCGCG GGCTACGCCA CCGTGTTCAT GGAGATCGTG ATGCCGATGG CGGCCGCCGG CATCGCGGCC ACCGCGATCC TGTGCTTTCT CTACGCCTGG AACGACTTCT TCTTCGCGCT GATCCTCACG CGCACCGATG CGCGCACCGC GCCGGTCGCG GTGGTCAACT TCATGAACTA CGAAGGCTGG GAGTGGGGCA AGATCGCTGC CGGCGGCTCG CTGGTGATGG CGCCCGTGCT GGTGTTCTCG ATGCTGGTGC GGCGCTACCT GGTCAGCGGC CTCACGGCCG GCGCGGTGAA GGGCTGA
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Protein sequence | MSTNRMASLR RRWPLARWAV PLVLFAMLLP FLWLLQMSFK PTPLILEFPP RVFFMPTLEH YVGLWQAGFP ESFANSLVTS IVSTLLALVF GIPAAYALSR WTGRGRFGLG LGILLTRMAP PIAFTIPFFL AYRYLGLLDT RTGLILIYMT FNLPLVIWMM QPFFDAVPAS LEEAALMDGA GYATVFMEIV MPMAAAGIAA TAILCFLYAW NDFFFALILT RTDARTAPVA VVNFMNYEGW EWGKIAAGGS LVMAPVLVFS MLVRRYLVSG LTAGAVKG
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