| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5372 |
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| Symbol | |
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| ID | 7975833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 78440 |
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| End bp | 79318 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795966 |
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| Product | malonate decarboxylase subunit beta |
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| Protein accession | YP_002947240 |
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| Protein GI | 239820055 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0777] Acetyl-CoA carboxylase beta subunit |
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| TIGRFAM ID | [TIGR03133] malonate decarboxylase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00542603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGCT ATGCCGAATG CTCGGCGCGC GAGCGGCTGG CGCTGCTGCT CGACGCCGGC
AGTTTTCACG AATGGCTGCC GCCGAGCGAG CGGGTCATGA GCCCGCACCT CGCGCAGCTT
GGCGTGCCCT CGGCCTTCGA TGACGGCGTG GCGATCGGCC GCGCGATGCT GGGTGGCCGC
GAGGTCTTCG CGGCTGCGCA GGAAGGCGCG TTCATGGGCG GCGGCGTGGG CGAGGTGCAC
GGCGCCAAGC TGGTCGGCCT GCTGCAGCGC GCGCTGCGCG ACCGGCCGGC GGCGGTGCTG
CTGCTGGCCG AATCGGGCGG CGTGCGGTTG CACGAGGCCA ACGCCGGCCT CATCGCGGTG
TCGGAAGTGA TGCGCGCCGT GCTCGACGTG CGCGCCGCGG GCATACCGGT CATCGTGCTG
ATCGGCGGCG CCAACGGTTG CTTCGGCGGC ATGGGCATCG TGGCGCGCTG CGCCGACCAC
ATCGTGATGA GCGATGTCGG GCGGCTCGCG ATGTCGGGCC CGGAAGTGAT CGAGGCCTCC
CACGGCGTGG ATGAATTCGA CTCGCGCGAC CGGGCACTGG TCTGGCGCAC GACCGGCGGC
AAGCACCGCT GGCTGACCGG CGATTGCGAT GCGCTGGTCG AGGACGACGT CGCGGAATTC
CGCGCAGCCG CCATCGCGGC GCTCGACCGG CAGCGGCCGC TGACCCAGGC GGCGCTGGAG
CAGGAGCACA GCCTGCTCAC GCAGCGCCTG CATGCCCTGC CGGACGGCGA CGCCGGCGGC
GACGAAGCGA CGCTGCTCTG GCGCGCGCTC GGCATTGCCG GCGCGGAAAA CGTCCCGGAC
CTTCCGGTGG AAGCGGTGCG CGCGCTGCGC ACCCTGTGA
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| Protein sequence | MISYAECSAR ERLALLLDAG SFHEWLPPSE RVMSPHLAQL GVPSAFDDGV AIGRAMLGGR
EVFAAAQEGA FMGGGVGEVH GAKLVGLLQR ALRDRPAAVL LLAESGGVRL HEANAGLIAV
SEVMRAVLDV RAAGIPVIVL IGGANGCFGG MGIVARCADH IVMSDVGRLA MSGPEVIEAS
HGVDEFDSRD RALVWRTTGG KHRWLTGDCD ALVEDDVAEF RAAAIAALDR QRPLTQAALE
QEHSLLTQRL HALPDGDAGG DEATLLWRAL GIAGAENVPD LPVEAVRALR TL
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