Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5371 |
Symbol | |
ID | 7975832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 77724 |
End bp | 78425 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644795965 |
Product | malonate decarboxylase, gamma subunit |
Protein accession | YP_002947239 |
Protein GI | 239820054 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03134] malonate decarboxylase, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0278339 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATGGA ATTCCCTGGT CACCCAGCTC TTCGGCTCCT TCCACGGCCT GCGTGCGGAT GGCGATTTTC TGCAGGGCGA AGTGATCTTC GAACGCGAGC CGCTCACGGT GATCGGCACC ACGAACCACG CGCCGATCGG CGTGCGGCTC GCGCTGGCGC AGGCGCGCGC GGTGCTCGAC ACCGTCAGGC AGCATCCGGG CCGTCCGATC CTGCTGTTGA TCGACACGCA GGGCCAGCAG CTGCGCCGGC GCGACGAACT GCTCGGCATC AATCGCGCGA TGGCGCACCT GGGCGCGAGC ATCGACCTGG CGCGGCGCCG CGGCCACCGC GTGATCGGCC TGGTGTACGA CCAGGCGCTG TCGGGCGGCT TCATCACCTC GGGGCTGATC GCCGACGCCT GCTACGCGCT GCCGGAGGCC GAGATCCGTG TGATGCGCAT TCCCGCGATG GCGCGCGTGA CCAAGCTGCC GGAGGACCGG CTCACCGAGC TGTCGAAATC CAACCCGGTG TTCGCGCCCG GCGTGCAGAA CTACGTGGCG ATGGGCGGCG TGCGTGCGCT GTGGACCGGC GACCTGCAAA CCCGCCTGCG CGATGCGCTG GCCCACACGC CGACCGAAGA CAGGCGCGCG CGCGACGGCG CCGAACGCGG TGGGCGCCGG CTCGCCGCCG CGGTCGTGCA GCGCGTGCTG GACGCCGCCT GA
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Protein sequence | MQWNSLVTQL FGSFHGLRAD GDFLQGEVIF EREPLTVIGT TNHAPIGVRL ALAQARAVLD TVRQHPGRPI LLLIDTQGQQ LRRRDELLGI NRAMAHLGAS IDLARRRGHR VIGLVYDQAL SGGFITSGLI ADACYALPEA EIRVMRIPAM ARVTKLPEDR LTELSKSNPV FAPGVQNYVA MGGVRALWTG DLQTRLRDAL AHTPTEDRRA RDGAERGGRR LAAAVVQRVL DAA
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