Gene Vapar_5188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5188 
Symbol 
ID7969847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5511878 
End bp5512534 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content68% 
IMG OID644795782 
ProductFHA domain containing protein 
Protein accessionYP_002947056 
Protein GI239818146 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGAAGA TGATCATTTC GATCGATGGC ACTGTCATCG GGCAAATGGC GCTTGCCAAG 
GACCGGACCA CGCTGGGGCG GCGCGCCTAC AACGACATCG TGCTCGACAA TCTCGCGGTC 
AGCGGCGAGC ATGCCGTGCT GCACATGCGC GGCGCTGAAG TCGAAATTGA AGATCTCAAC 
AGCACCAACG GCACCTACGT CAATGCGATC GTCGTCCAGA AGCAGCAGAA GCTCAAGGAC 
AACGACGTCA TCGAAATCGG CGGCTGCCGC CTGCACTTCC GCGCCCGCAG CAGCGCGGCC 
GCCGACGCCG GTTCCACCCG CGGTGCTGCG CGCGGCGACT ACGCGGCCTC CGTTCCGCTG 
TCGGCCGCAC CCACCGAAGC CGGCGCGCTG CTCGAACTGG GCATGCCCGC ACTGCGCGTT 
CTCTCGGGCA CCGACCAGGG CCAGGAAGTG CCGCTGCAGA AGGTGGTCAC CACCATCGGC 
AAGCCCGGCG TTGCGGTGGC CGTGGTCACG CGCCGCCGCC AGAGCTACAT GGCTTCCACC 
ATCATGGGCG GCGTCACGCT CAACGGCGCC CCGCTCGGCG CCGAGCCCGT CGGGCTGCAG 
GAAGGCGACG TGCTCGAGCT TGGCGGCGCC ACGCGCATGC AGTTCGTGCG GGTCTGA
 
Protein sequence
MPKMIISIDG TVIGQMALAK DRTTLGRRAY NDIVLDNLAV SGEHAVLHMR GAEVEIEDLN 
STNGTYVNAI VVQKQQKLKD NDVIEIGGCR LHFRARSSAA ADAGSTRGAA RGDYAASVPL 
SAAPTEAGAL LELGMPALRV LSGTDQGQEV PLQKVVTTIG KPGVAVAVVT RRRQSYMAST 
IMGGVTLNGA PLGAEPVGLQ EGDVLELGGA TRMQFVRV