| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5071 |
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| Symbol | tgt |
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| ID | 7974190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5385316 |
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| End bp | 5386515 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795665 |
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| Product | queuine tRNA-ribosyltransferase |
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| Protein accession | YP_002946939 |
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| Protein GI | 239818029 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
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| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.906893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCA CCACGTCCTC CCTGCCGCGC CTGAAGTTCG AACTTCTCAA GACCGATCCC
GCGAGCCACG CGCGCCGCGG CACGCTCACG CTCAACCATG GCGTGGTGCA GACGCCGATC
TTCATGCCCG TGGGCACCTA CGGCACCGTC AAGGGCGTGA TGCCGCGCAG CCTCGAGGAA
ATGGGCGCGC AGATCATCCT GGGCAATACC TTCCACCTGT GGATGCGCCC CGGCCTCGAC
GTGATGGCCA GCTTCGGCGG GCTGCATTCG TTCGAGAAAT GGAACAAGCC CATCCTCACC
GACTCGGGCG GCTTCCAGGT CTGGTCGCTG GGCGCGATGC GCAAGATCAG CGAGGAAGGC
GTGAAGTTCG CCTCGCCCGT CAACGGCGAC AAGCTGTTCC TCACGCCCGA GGTCTCGATG
CAGATCCAGA CCATCCTCAA CAGCGACATC GTCATGCAGT TCGACGAGTG CACGCCCTAC
GACACCAAGG GCCACATCAC GACCGAGGCC GAGGCGCGCA TCTCGATGGA GCTGAGCCTG
CGCTGGGCCA AGCGCTGCCA GCACGAGTTC GCGCGGCTCC AGAACCCCAA CGCGCTGTTC
GGCATCGTGC AGGGCGGCAT GTTCGAGAAC CTGCGCGAGG AATCGCTCGC GGCGCTGGTG
GAGATGGACT TTCCGGGCTA TGCCATCGGC GGCGTGAGCG TGGGCGAGCC CAAGGAAGAG
ATGCTGCACA TCATGGGCCA CACGCCGCAC CGGCTGCCCG CGAACAAGCC GCGCTACCTG
ATGGGCGTGG GCACGCCCGA AGACCTGGTG CAGGGCGTGG CCGACGGCGT CGACATGTTC
GACTGCGTGA TGCCGACCCG CAATGCGCGC AACGGCACGC TGTTCACGCG CTTCGGCGAC
CTGAAGATGC GCAATGCGCG CCACAAGAGC GATCCGCAGC CCATCGACCC GAGCTGCACC
TGCCATGCCT GCGCGGGCAC CTCGGGCGTG AGCTGGAACG ACGGCGGGCG CGAGGGCTTC
AGCCGTGCCT ACCTGCACCA CCTCGACCGC TGCGCCGAGA TGCTCGGGCC GATGCTCGCC
ACCATCCACA ACCTGCACTA CTACCTGAAC CTGATGCGCG AGATCCGCGA ATCGCTCGAG
GCGGGCACCT TCACGGAATT CCGCGCGCGC TTCAAGTCGG AGCGCGCGCG CGGCATCTGA
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| Protein sequence | MTATTSSLPR LKFELLKTDP ASHARRGTLT LNHGVVQTPI FMPVGTYGTV KGVMPRSLEE
MGAQIILGNT FHLWMRPGLD VMASFGGLHS FEKWNKPILT DSGGFQVWSL GAMRKISEEG
VKFASPVNGD KLFLTPEVSM QIQTILNSDI VMQFDECTPY DTKGHITTEA EARISMELSL
RWAKRCQHEF ARLQNPNALF GIVQGGMFEN LREESLAALV EMDFPGYAIG GVSVGEPKEE
MLHIMGHTPH RLPANKPRYL MGVGTPEDLV QGVADGVDMF DCVMPTRNAR NGTLFTRFGD
LKMRNARHKS DPQPIDPSCT CHACAGTSGV SWNDGGREGF SRAYLHHLDR CAEMLGPMLA
TIHNLHYYLN LMREIRESLE AGTFTEFRAR FKSERARGI
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