| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5029 |
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| Symbol | |
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| ID | 7974147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5349256 |
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| End bp | 5351382 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795622 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002946897 |
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| Protein GI | 239817987 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACAAGT TCTTTCTGGC AACGCCTCTC GCGCTCGCGG GGGCCTTTTC CCACGCCCAA
ACCACCGAGC CCGCCGCCGA TCCCGCCGCC GAGGCGCGCG GGCAGCTCGG CACCGTCACG
GTGGAATCCA GCGCGACCAC CGGCTTCGTC GCCAACACGG TGGAGGCCGG CACCTTCCGC
GGCGCCGGCA TCATGGACGT GCCCGCCACG GTCAACACCG TCACGCGCGA GGTGCTGGAG
CTGCAGGGCG CGGCCAGCAT CTACGAGGCG CTGCGCAACA CGGCCGGCGT GACGCGCCAG
CAGAACGGCG GCGACACCTT CGACCAGCTC GTGATCCGCG GCATCGCGGT GGAGAACCGC
ACGAACTACC GGCTCAACGG CTCGCTCGCA ATTCCCAACG TCTCCGAGAT TCCGATGGAG
AACAAGGAGC GCGTCGAGGT GCTGAAGGGC GCATCGGCGC TCTACTACGG CTTCACCACG
CCGGCGGGCA TCGTCAACCT CGTGACCAAG CGCGCCGGCA GCACGCCCGT GAGCACCGTC
GGCCTCACGC TCGACGACCG CGGCTCGGCG CAGGCGCTGG TCGATCTCGG GCGGCAGTTC
GGCGACCAGA AGCAGTACGG GCTGCGCATC AACGCGGCCG GCGGACGCAT CGGCTCCAAC
ATCGACGGCG TGGACGGCCA CCGCAGGTTC GTGTCGGCCG CGTTCGACTG GCGCGTCAAC
AGCCGGCTCA CGCTGAAGGC CGACGTCGAG AACTACCGCA AGCGCATCAC CGAGCAGGCC
GGCATCACCC GGCTCGCGGC CGTCAACGGC GTGATCGCGC TGCTCGCCCT GCCCAACCCC
GACAAGCTGC TCGGGCCGCC GTGGGCCGTG TTCGACGCCG AGGTCACCAA CACGCAACTG
CGCGCCGACT ATTCGCTCGG AGGCAACTGG GCATTGACTG TGGAAGCCGG CCACTCCGAA
GCCGAGCGCG ACCGCCGGCT TGCAAGCTTC AGCAACTACA ACGTGCTGAC CGGCGCCGGC
CGCATCACCG GCAACGACCA GAGCCTGAAG CAGACCTCCG ACCTGCTGCG CACCGAGCTG
TTCGGCACCT TCTCGACCGG CAGCGTGCAG CACGAGCTCA CGCTCGGCGC CGCGCGCAGC
AAGAAGACGC AGGACCCGAT CTTCCAGCGC AACTACGGCG GCGCCGGCAC CGTGCAGAAC
CTGTACAACC CGGTGCCCAT CGGCTATTTG CCGCTGACGG CGCGGCCGGC CCGGCCCACC
ACCGGCGCGC AGGAGAGCGA GGAGCTCGGC CTCTATGCGC TCGACCGCAT CACCTTCTCG
CCGCAGTGGC AGCTGGTGGC GGGCCTGCGC CGCACGCACT ACGAGAGCAC GCAGGGCGCG
GGCGCCACGA TCCCCTCGCT TGCCTACGAC GTGCACAAGA CCACGCCGCT CGCGGCGCTG
AGCTACAGGT TCACGCCCGC GCTGGTGGGC TACGTCTCCT ATGCGGAGGG CGTGGAGGAA
GGCGAGATCG CACCGGCCGG CACCGCCAAC CAGAACGCCC ACATGCCGCC CGGCGTGAGC
AAGCAGAAGG AAATCGGCCT GCGCTGGCTC ACCGACGGCG GCATGCTGCT GTCGGGCGCG
CTGTTCGACA TCGAACGCCC CGGCGCCTAC ACCAACAGCG CCAACACCTT CGTGGCCGAC
GGGCGCCAGC GCTACCGCGG ACTTGAAGTT TCGGCGCAGG GCCGCCTGAC GCGCGCGCTC
GCCTGGCAGC TGTCGGCCCA GTCGCTCGAT GCCGAGTTCC GCGGCATCAA CGCGCAATAC
AACGGCAAGA TGCCCGAGAA CACCGCCAGG CAGACGGCCA GTGCCTTCCT CTCGTACGAC
ATTGCCGCGG TGCCGGGCCT GTCGGTCAAC GCGGGCGCCT ACTACACGGG GCGCCGGCCG
GTGGACGACC TGAACCAGGC CTTCATCGGC GGCAACACCC TCTTCGGCCT GGGCGCGCGC
TACGTGGCGC AACTGTTCGG CAAGCGCACG CTGTGGCAGG TCAACGTCGA CAACGTGGCC
GACAAGCGCT ACTGGGCGGC GGCCGGCACG CGGCTGGCCG TGGGCGCGCC GCGCAGCATC
AAGGCGACGC TCAAGGTCGA CCTTTGA
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| Protein sequence | MHKFFLATPL ALAGAFSHAQ TTEPAADPAA EARGQLGTVT VESSATTGFV ANTVEAGTFR
GAGIMDVPAT VNTVTREVLE LQGAASIYEA LRNTAGVTRQ QNGGDTFDQL VIRGIAVENR
TNYRLNGSLA IPNVSEIPME NKERVEVLKG ASALYYGFTT PAGIVNLVTK RAGSTPVSTV
GLTLDDRGSA QALVDLGRQF GDQKQYGLRI NAAGGRIGSN IDGVDGHRRF VSAAFDWRVN
SRLTLKADVE NYRKRITEQA GITRLAAVNG VIALLALPNP DKLLGPPWAV FDAEVTNTQL
RADYSLGGNW ALTVEAGHSE AERDRRLASF SNYNVLTGAG RITGNDQSLK QTSDLLRTEL
FGTFSTGSVQ HELTLGAARS KKTQDPIFQR NYGGAGTVQN LYNPVPIGYL PLTARPARPT
TGAQESEELG LYALDRITFS PQWQLVAGLR RTHYESTQGA GATIPSLAYD VHKTTPLAAL
SYRFTPALVG YVSYAEGVEE GEIAPAGTAN QNAHMPPGVS KQKEIGLRWL TDGGMLLSGA
LFDIERPGAY TNSANTFVAD GRQRYRGLEV SAQGRLTRAL AWQLSAQSLD AEFRGINAQY
NGKMPENTAR QTASAFLSYD IAAVPGLSVN AGAYYTGRRP VDDLNQAFIG GNTLFGLGAR
YVAQLFGKRT LWQVNVDNVA DKRYWAAAGT RLAVGAPRSI KATLKVDL
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