| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4086 |
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| Symbol | |
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| ID | 7974408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4331304 |
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| End bp | 4332476 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644794672 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_002945965 |
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| Protein GI | 239817055 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0908917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCGG CCGCATTGCA AGGCTCGCCA GGGGGCCCGC TGCAGGGCCT CACCGTCATC
GACCTGACGC GCGTTCTCGC GGGGCCCTAC TGCACGCTGC TGCTCGCCGA CCTGGGCGCG
CGCGTGATCA AGGTGGAGCA GCCGGGCCTG GGCGACGACG CGCGCCAGAT CGGCCCCTTC
GTCGACGGCG ACTCGGCCTA CTTCATGTCG GTCAACCGCA ACAAGGAATC GATCGCGCTG
GACCTGAAGG CGCCGGCCGA CCGCGCCGTC TTCGAACAGC TGCTGGCCAC GGCCGACGTG
CTGGTCGAGA ACTTCCGGCC CGGCACCATG GAGAAGCTCG GCTACGGCTG GCCGCAGCTC
CATACGCGCT TTCCGCGGCT GGTGTTCACC TCGGTCTCGG GCTTCGGCCA GACCGGGCCC
TACAGCCGGC GGCCCGCCTA CGACATGGTG GTGCAGGCGA TGGGCGGCAT CATGAGCCTG
ACCGGCCACC CGGGCGCGCC GCCCACGCGC GTGGGCGTGT CGATCGGCGA CCTGGGCGCC
GGCCTGTACG CGGCCGTCGG CACGCAGGCC GCGCTGCTGC AGCGCGGACG CACGGGCCTG
GGCGACCGCG TGGACGTGGC GATGCTCGAC TGCCAGGTCG CGCTGCTGGA GAACGCGATC
TCGCGCATGG AGGCGGACGG GCGCGCGCCC GGGCCGATCG GCTCGCGGCA TCCGTCGATC
ACGCCGTTCG ACGTGTTCCG CGCGGCGGAT GGCTGGTTCG TGATCGCCGC GGGCAACGAT
GCGCTGTTCC AGCGCCTGTG CGCGGCACTC GAGCTGCCGG CGCTGCCCGA GGATGCGCGC
TTTGCCACCA ACCCCGAGCG CTGCCGGCAC CACGAGGCGC TGAAGCAGCT GCTCGAAGAG
CGCCTGGCCG CGGCGCCCTG CGCGCACTGG CAGGCGCTGC TGATGCAGCA CAACATTCCC
ACCGGCGAGT ACAACGACGT GGCCGCGGTG GTGAACGATC CGCAGGTGCA GGCGCGCGAG
ATGCTGGTGC AGGTCCGCAC GCAGGGCGGC CGGCCGCTCA CGGTGGCGGG CAACCCGGTG
CACGTGGGCG GCCACCGCAC GCAGGTGGCA AGGCAGCCGC CGCGGCTGGA CCAGGACCGC
GAGGCCATCC TGGCGGGGCT GGCGCGGCAA TGA
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| Protein sequence | MTPAALQGSP GGPLQGLTVI DLTRVLAGPY CTLLLADLGA RVIKVEQPGL GDDARQIGPF
VDGDSAYFMS VNRNKESIAL DLKAPADRAV FEQLLATADV LVENFRPGTM EKLGYGWPQL
HTRFPRLVFT SVSGFGQTGP YSRRPAYDMV VQAMGGIMSL TGHPGAPPTR VGVSIGDLGA
GLYAAVGTQA ALLQRGRTGL GDRVDVAMLD CQVALLENAI SRMEADGRAP GPIGSRHPSI
TPFDVFRAAD GWFVIAAGND ALFQRLCAAL ELPALPEDAR FATNPERCRH HEALKQLLEE
RLAAAPCAHW QALLMQHNIP TGEYNDVAAV VNDPQVQARE MLVQVRTQGG RPLTVAGNPV
HVGGHRTQVA RQPPRLDQDR EAILAGLARQ
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