Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3972 |
Symbol | |
ID | 7974537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4215278 |
End bp | 4216150 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794558 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002945852 |
Protein GI | 239816942 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.539767 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCACGC TCGATCTTGA ATTGCTGCGC TCCTTCGCGG CCGTCGTCAG CCACCACAGC TTTGCGGCGG CCGCCGTGCA CCTGGGTCGC ACGCAGTCGG CCATCACGCA GCAGATGCAG CGGCTCGAAG AGCAGGTGGG CCACGCGCTG TTCGCCAAGC AGGGCCGGCA GAAGCGCCTC ACCGAACATG GCGAGCGGCT CCTGACCTAC GCGCACCATC TGCTCGCGCT CAACGACGAG GCGCTGCGCA GCCTGCGCCA GGGCGAGCTC GAAGGCAACC TGCGCATCGG TGCGCCGCAC GACGTGGCCG AGACCATGCT GCCGCTGCTG CTCACCGAGG TGGCGCGCAC CTCGCCGCTG CTGCAACTGG ACATCCACAT CGGCCGCAGC CCCTATCTCA TGACCTCGCT CAAGAGCGGC GAGGTCGACA TGATCATCTC GAACCGCGCC GACCCGCAGT TCGACGGCGT GGTGCTGCGC AACTCGCCGA CCGTGTGGCT CTGCGCCGCC AGCTACGTGC ACGACCCGTC CAAGCCGGTG CCGCTGATCA TGGCTGACGG CCCGAGCATC TTCCGCCGCA TCGGCCACGA GGCGCTCGAC GCCGCGGGCG TGGCATGGAC GCCGCGCTAC ACCTCGTCGA GCCTGATCGG CATCAAGGCC GCCTTGCGCG CGGGCCTCGG CGTCACGGCG CGCGGCGTGG AGCAGCTCGA CGCGGGCCTG CGCGTGCTGG GCGCCGGCGA CGGCATGCCG CGCCTGCCCG ACCTGGCCTA CTACCTGTAC GTGCGCAGCC ACGTGGTGAA TCCGGTCACG CGGCAGGTGT TCGAGACCTT GAAGAAGCAC CTGAGGTTGC CGCGGACCGA CATGCCGGCT TGA
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Protein sequence | MPTLDLELLR SFAAVVSHHS FAAAAVHLGR TQSAITQQMQ RLEEQVGHAL FAKQGRQKRL TEHGERLLTY AHHLLALNDE ALRSLRQGEL EGNLRIGAPH DVAETMLPLL LTEVARTSPL LQLDIHIGRS PYLMTSLKSG EVDMIISNRA DPQFDGVVLR NSPTVWLCAA SYVHDPSKPV PLIMADGPSI FRRIGHEALD AAGVAWTPRY TSSSLIGIKA ALRAGLGVTA RGVEQLDAGL RVLGAGDGMP RLPDLAYYLY VRSHVVNPVT RQVFETLKKH LRLPRTDMPA
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