| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2889 |
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| Symbol | |
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| ID | 7970778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3034383 |
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| End bp | 3035798 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793474 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_002944775 |
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| Protein GI | 239815865 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.78127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGCAA GTCCTGAAAA CGCAGCCGCC GGCCAGAGCG GCCTGCACGG AACGCCGGTG
GCGCCCGTGG GCGCACCGCG CGCGCTGTGG AAGACCTTCC TTTTCTTCCT GGCGCCGATG
CTGCTCAGCA ACATCCTGCA GTCGATGTCG GGTACCATCA ACAACATCTA CATCGGCCAG
ATGATCGGTG TCGGCGCGCT GGCGGCCGTG TCGAGCTTCT TTCCGGTGAT GTTCTTCTTC
ATCGCCTTCG TCATCGGCCT GGGCGCCGGC GCCTCGGTGC TGATCGGCCA GGCCTGGGGC
GCGCGCGATG CCGCCAAGGC CAAGGCCATC GCGGGCACCG CGCTGTCGGT GGGCATCCTG
CTCGGGCTGG CGGTGGCCGT GTTCGGCGGC GCCTTCACGA CGCCGCTCTT GTCCTTCCTG
GGCACGCCGC CCGACGTGCT GGCCGACTCC ACGCGCTATG CGCGCATCAT GCTGATCGCG
ATGCCGGGGC TGTTCGTGTT CCTGCTTTCC ACCGCGATGC TGCGCGGCGT CGGCGACACG
GTCACGCCGC TGCTCACGCT GCTGATCTCC ACCGGAACCG GCCTGGTCGT CACGCCCGCA
CTGATCCGCG GCTGGGGCGG CCTGCCGCAG CTGGGCGTTG CGAGCGCGGC CTGGGCCTCG
GTGCTGGCCT TCGTGCTTGC CACGCTGTGG CTGGGCTGGC GCCTGCGCCG CCGCGGCAGC
CCGCTGGCGC CCGATGCGGA GTTCATCCGC CACCTGCGCA TCGACCCCAA GCTGCTGAAG
GCCGTGCTGA AGGTGGGCAT ACCCACAGGC GTGCAGATGA TCGTGGTGGC GCTGGCCGAG
GTGGCGCTGC TCTCGCTGGT CAACAGCTAT GGCTCCAGCG CGACCGCGGC CTACGGCGCG
GTGAACCAGG TGGTGGCCTA CGTGCAGTTC CCGGCCATCT CGATCGCCAT CACGGCGTCC
ATTCTTGGCG CGCAGGCCAT CGGCGCCGGC CGGGCCGACC GGCTGGGCGC CATCGCCAAG
ACCGCGCTGC TGATGAACCT GGTGCTCACG GGCGGCCTGG TGCTGCTGGG CTACCTGTTC
TCGCGCCACC TCATGGGCTT CTTCATCACC AGCGCGCCGG TGATCGAGAT CGCGCAGACG
CTGCTGCACA TCATGCTGTG GAGCCTGGTG ATCTTCGGCA TGGCCTCGGC CATCTCGGGG
ATCATGCGCG CCAGCGGCTC GGTGCTGGTG CCCACGGCCA TCTCGATCCT GTGCCTGATC
GGCATCGAGG TGCCCGTGGC CTGGTTCATG AGCCACCGCA TCGGGCTCAA CGGCATCTGG
TGGGCCTACC CCGTGACCTT CGGCGCGATG CTGCTGCTGC AGACGGCCTA CTACCGGCTG
GTGTGGCGCA AGAAGGCGAT CCGCCGGCTG GTATAG
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| Protein sequence | MRASPENAAA GQSGLHGTPV APVGAPRALW KTFLFFLAPM LLSNILQSMS GTINNIYIGQ
MIGVGALAAV SSFFPVMFFF IAFVIGLGAG ASVLIGQAWG ARDAAKAKAI AGTALSVGIL
LGLAVAVFGG AFTTPLLSFL GTPPDVLADS TRYARIMLIA MPGLFVFLLS TAMLRGVGDT
VTPLLTLLIS TGTGLVVTPA LIRGWGGLPQ LGVASAAWAS VLAFVLATLW LGWRLRRRGS
PLAPDAEFIR HLRIDPKLLK AVLKVGIPTG VQMIVVALAE VALLSLVNSY GSSATAAYGA
VNQVVAYVQF PAISIAITAS ILGAQAIGAG RADRLGAIAK TALLMNLVLT GGLVLLGYLF
SRHLMGFFIT SAPVIEIAQT LLHIMLWSLV IFGMASAISG IMRASGSVLV PTAISILCLI
GIEVPVAWFM SHRIGLNGIW WAYPVTFGAM LLLQTAYYRL VWRKKAIRRL V
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