| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2412 |
|---|
| Symbol | |
|---|
| ID | 7970456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2576917 |
|---|
| End bp | 2578413 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792995 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_002944305 |
|---|
| Protein GI | 239815395 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.376385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGAC TCCGATCGAT TGCCGCCCTT GGCCTGGCGC TGGGCCTGGG TCTCGGCCTT
GCGGGCTGCG GCCTGACGCG TCCGCCGGCC GCGGTCGAGG CGCCCTTCCC GGCCCAATGG
CATGCACCGC TGCCGCACGG CGGTTCGCTG GCATCGTTGG CCGACTGGTG GCGCCAGCTG
GACGATCCGC TGCTGGTCGA GCTGATTGCC GCGGCCGAGG CCGCAAGCCC CAATCTCGCC
AGCGCCGCGG CGCGCGTGGC CGAGGCGCGT TCGACGCGCG TGCAGGCCGG CGCGGCGCTG
CTGCCCAACC TGGACGCTAC GGCATCAGCC AGCCGCGGCG TCTCGGGCTC CTCCTTCGGC
TCGGGGGGCG CGGCTTCCTC GTCCAGCAGC AGCACGGCTG CCATCGCGCC GCTGACCACG
CTACAGGCCG GCCTGCAGTC CAAATGGGAA ATCGACCTGT TCGGCCGCCT GCGTGCCGAC
CGCGATTCGG CCGAGCAGAA GCTGAGCAGC GCCACCGCCA AGTGGCACGA GGCCCGCGTG
GCCGTCGCGG CCGAAACGGC CAACGCGTAC TTCGCCGAAC GTGCCTGCCA GCAGCAGCTG
CGCGTGTCCG AGTCCGACGC CAAGTCGCGC GGCGAAACCG CACGCCTCAC CGACCTGTCG
GCGCGCGCCG GTTTCACCGC GCCGGCCGAT GCCGCGCTCG CACGCGCCAG CGCCTCGGAC
GCCTCGGGCC GCCTGACCCA GCAGCGCGCG GTGTGCGCGG TGCAGCGCAA GGCGCTGGTG
GCGCTCAGCG GCATCGACGA ACCCACGCTT GAACGCAAGC TCGCCGCCTC GCCCGCGCAG
CGCACGCTGC CCGCGGTTGG CAGCATCGCC AGCGTGCCGG CCGAGGCGAT CTCGCAGCGG
CCCGACGTGT ACGCAGCCGA ACTCGGCGTG GCGTCGGCCA GCGCCGACGT GGGCTCCGCC
GAGGCCGAGC GCTATCCCAG GCTCAGCATC TCGGGTTCGA TCGGCCGCAT GCAGATCCGC
ACCAGCGGCT TCCGCGAGTC GCTCGACACC TGGACGATCG GACCGGTGTC GCTCACCGTG
CCGCTGCTCG ACGGCGGTGC CCGTGCGGCC AACAGCGACG CGGCCAAGGC GCGCTACACC
GAGGCCGTGT CGCTCTACCG CGCGAACGTG CGGCAGGCGG TGCGCGAGGT GGAGGAAGCG
CTGGTCAACC TCGAGGCCAC CGATGCGCGC GCAGCCGATG CCGATGCGGC GGTGAAGAAC
TACCAGGCCT CGTTCGACGC CACCCAGGCG CGCTACCAAA GCGGCCTGGC CAGCCTGTTC
GAGCTCGAGG ATTCACGCCG TACGCTCTTT GCCGCGCAGA CCGCGCGCGT CTCGCTGCAG
CGCGAGCGCA CCGAAGCCTG GGTGGCGCTG TACCGCTCCA TGGGCGGCGG CTGGACCCGC
CCCGAATCGC CCTCAATGAC TTCCAACCCG GCCGCCAAGG TCGCGACGTC GCCATGA
|
|---|
| Protein sequence | MRRLRSIAAL GLALGLGLGL AGCGLTRPPA AVEAPFPAQW HAPLPHGGSL ASLADWWRQL
DDPLLVELIA AAEAASPNLA SAAARVAEAR STRVQAGAAL LPNLDATASA SRGVSGSSFG
SGGAASSSSS STAAIAPLTT LQAGLQSKWE IDLFGRLRAD RDSAEQKLSS ATAKWHEARV
AVAAETANAY FAERACQQQL RVSESDAKSR GETARLTDLS ARAGFTAPAD AALARASASD
ASGRLTQQRA VCAVQRKALV ALSGIDEPTL ERKLAASPAQ RTLPAVGSIA SVPAEAISQR
PDVYAAELGV ASASADVGSA EAERYPRLSI SGSIGRMQIR TSGFRESLDT WTIGPVSLTV
PLLDGGARAA NSDAAKARYT EAVSLYRANV RQAVREVEEA LVNLEATDAR AADADAAVKN
YQASFDATQA RYQSGLASLF ELEDSRRTLF AAQTARVSLQ RERTEAWVAL YRSMGGGWTR
PESPSMTSNP AAKVATSP
|
|---|
| |