| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2260 |
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| Symbol | |
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| ID | 7969974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2405077 |
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| End bp | 2405796 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644792842 |
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| Product | type III secretion system inner membrane R protein |
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| Protein accession | YP_002944155 |
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| Protein GI | 239815245 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.311436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCCA TTTTCTATGC GGTGCCGCTG CCGGCTTCGG TGCGCATGCT GCTGGTACTG
GGGTTGTCTA TAGCGCTGGC TTTCGGTCTT TCAGCCCCGG TTGGCGCATG GATGGGCTGG
AGCGAACTGC TGTTCTCAGC CCTGGCTGAG CTTGCGCTGG GCGCCACGCT CGGCCTCGGG
ATCCTGCTGG CCTTTGGGGC GTTTTCCATC GCGGGGCAGT TGCTGGACGT TCAATTGGGT
TTCGGCATTG CGCAAGTCAT CGATCCGGTG ACGCAGCGCC CCATTCCGGT GCTGACGTCG
GCCTTCAACT ACCTCGCGGT CCTGGTGTTC TTTCTTCTCA ACGGGCATCA CGCGCTGCTG
CGGGGCATCA GCTACAGCCT GGAGCGCTTC CCCGTGGGCG CTTCCTGGTC TATCGGACAT
GCGGTTGCTC CGGTGCTGAA GCAGGCGGCG GGACTCTTCA GCCTGGGCTT TGCGCTGGCG
GCACCGGTGG TGTTCTGCAT CCTGCTGGTG GAGTTTGCTT TGGGCGTTGT GGGCCGCAAC
CTGCCGCAGA TGAACATGTT CACCATGGGC ATTCCGGTGA AGATCCTGGT TGGCCTGGTG
GCGCTTTCAT TCTGGTTTGC CGGCATCGGC TCGGTCATGA CGCGCGCCTA TGCGAGCATC
GCCTCGACAT GGGACGGCAT CTTTGTTGCC GCGCCGACGC CAACACAGCA GGGGCGCTGA
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| Protein sequence | MTPIFYAVPL PASVRMLLVL GLSIALAFGL SAPVGAWMGW SELLFSALAE LALGATLGLG
ILLAFGAFSI AGQLLDVQLG FGIAQVIDPV TQRPIPVLTS AFNYLAVLVF FLLNGHHALL
RGISYSLERF PVGASWSIGH AVAPVLKQAA GLFSLGFALA APVVFCILLV EFALGVVGRN
LPQMNMFTMG IPVKILVGLV ALSFWFAGIG SVMTRAYASI ASTWDGIFVA APTPTQQGR
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