Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1923 |
Symbol | |
ID | 7971102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2057064 |
End bp | 2057570 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644792522 |
Product | Spore coat U domain protein |
Protein accession | YP_002943836 |
Protein GI | 239814926 |
COG category | [S] Function unknown |
COG ID | [COG5430] Uncharacterized secreted protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAC TCTCCCTCAT CGTTGCAGCC ACCCTTGCAG TCACCACCAG CGCTGTCTTG GCAGCCACGA GCCCGGCCAC GGCCACGTTT CAGGTCCTGA TCACTGTGGC CAAGGCCTGC TCGGTCGTGG CGGGCGCCGG CTCGAAGATC GACTTCGGTA CTGTCGATTC GTCGGCCACC AACCTGAGCG GCAACAGCAA CATCAGCGTG ACCTGCTCCA AGACCACGCC GTACAACATC GGCCTGCTGC CTTCGAACAA CAACACCACC GGCGCCGGCG TGATGAGCCC CGCAAGCGGT TCGGACACGG TGGCCTACCA GCTCCGTTCG GTGAGCGCTA CGGGCTCGGT CTGGGGCAGC ACGGCAACGT CCACCGCCGT GGGCAACGGC GTGGCCGGCA CCGGCACCGG CGCAGCGCAG ACGATCCCCG TGTACGCCAC GGTTGCCAGC GCCAACGTGA CGCCTGGCGC CTACTCGGAC ACGGTGACGG TCCAGGTCAA CTACTGA
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Protein sequence | MKKLSLIVAA TLAVTTSAVL AATSPATATF QVLITVAKAC SVVAGAGSKI DFGTVDSSAT NLSGNSNISV TCSKTTPYNI GLLPSNNNTT GAGVMSPASG SDTVAYQLRS VSATGSVWGS TATSTAVGNG VAGTGTGAAQ TIPVYATVAS ANVTPGAYSD TVTVQVNY
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