| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1529 |
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| Symbol | |
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| ID | 7973128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1647233 |
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| End bp | 1648225 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792128 |
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| Product | type II secretion system protein |
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| Protein accession | YP_002943446 |
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| Protein GI | 239814536 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCAGA ACCTGGTTGG AGACACGCTC ATTACGCTGT CGGTGCTGGT CTTCGTGACG
GTGCTGATGG TGATCGAGGG CCTGTACATG CTGTGGCGCT CCTACAGGGG CCCCGGGGTG
CAGAAGATCG GCAAGCGGCT GCAGGCGCTG TCGGCGGCCA CCGACCGCAT CGCGCAGGCG
CGGCTCGTGA AGGACCGCGT GCTCAGCGAG GCGCCGTGGA TGCAGCGCGT TCTCTTGAAG
CTTCCGCGAG CCCACCGCCT GGACCGCTTC ATTCTTCAGG CCGGTCTGGA ATGGACCGTG
TCCCATGTGC TGCTGGCTTG CGCGTTGTCC GGCATGCTTT TTTTCTTTGC GATGACGTCG
CTCGCGAACC AGCCCGCATG GATTGCTCTG CTGGTGAGCG CAGCCGGCGC CGCGGTGCCG
CTGCTCTATC TGAACCATCG GCGTAGCCGC CGCCTCGCGC ACCTCGAAAG GCAGCTGCCG
GACGCGCTGG ACCTGGTGAC GCGCGCGCTG CGCGCGGGCC ATTCGTTCGC GAGCAGCGTG
CAGATGATCG GTGACGAAAT GTCTGAGCCC ATCGCGGGCG AGTTCCGCAT GGTGGCCGAT
GAGGTCGGCT TCGGTGTTTC GCTGCAGCAG GCGCTCACGA ACATGAGCGA GCGCGTGCCG
CTCACCGACC TGCGCTACTT CGTGGTGTCG GTGCTGATTC AGCGCGACTC CGGCGGTAAT
CTGACCGAGG TGCTGGGCAA CCTGAGCCGG CTCATCCGCG ACCGCCTCAA GCTGCTGGCG
CGGGTGCGGG TGCTGTCGGC GGAAGGGCGG CTGTCGGCCT GGATCCTCGG CCTGATGCCC
TTTGCGCTGG TGGCGCTCCT GAATGCCTTC AACCCGGAAT TCATGTCGCC GCTGTGGACC
GATCCGATCG GTATCACGGC CGTCAAGTAC ATGCTGGGCC TGATGGTCAT CGGCGCGGTG
ATCCTGCGCA AGATCGTGAA GATCCGTGTC TGA
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| Protein sequence | MFQNLVGDTL ITLSVLVFVT VLMVIEGLYM LWRSYRGPGV QKIGKRLQAL SAATDRIAQA
RLVKDRVLSE APWMQRVLLK LPRAHRLDRF ILQAGLEWTV SHVLLACALS GMLFFFAMTS
LANQPAWIAL LVSAAGAAVP LLYLNHRRSR RLAHLERQLP DALDLVTRAL RAGHSFASSV
QMIGDEMSEP IAGEFRMVAD EVGFGVSLQQ ALTNMSERVP LTDLRYFVVS VLIQRDSGGN
LTEVLGNLSR LIRDRLKLLA RVRVLSAEGR LSAWILGLMP FALVALLNAF NPEFMSPLWT
DPIGITAVKY MLGLMVIGAV ILRKIVKIRV
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