| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1078 |
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| Symbol | |
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| ID | 7969600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1183156 |
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| End bp | 1183839 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644791674 |
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| Product | hypothetical protein |
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| Protein accession | YP_002942995 |
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| Protein GI | 239814085 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCGCT TCGCAAGCCA GGGAGCCCGC CGCGGCTTCA CGCTGATCGA GCTGCTGGTG
GCCATTTCGG TGATGGCGCT GCTCGCGCTC GTGAGCTGGC GCGGCCTGGA CAACATGTCG
CGCGCCACCA CGCTGAACCA GCAGCGCGCC GACGCGGTGC TGGCGCTGCA GACCACGCTC
TCGCAATGGG GCGCCGACCT CGACGCCGTG ACCCCGATCG CGCAGACCCG CCCGATCGAC
TGGGACGGCC GCGTGCTGCG GCTCACGCGC CGCGGCAGCG ATGCGGGCGC CCCCGCCATG
CTGGTGGTGG CGTGGACGCT GCGCACCGGT GCCGACGGCA CCCGCTGGCG GCGCTGGCAG
TCGCCGCCCT TCACCACGCG CGGCGAATGG CAGCAGGCGT GGAACCTGGC CTCCTCGTGG
GCGCAGGAAG GCGGCGGCGG CGACGTCGCC CTGATGCCGG TCGCGAATTG GCAGCTCTAC
TACTTCCGCG AGAACGCCTG GACGCCCGCG GGCGAACTGC CGGCCAGCGC GCCCAATCCG
GCGAACCCGG CCAATCCCAT CGGCGCCCTC GTGAACATGC CGGACGGCGT TCGGCTGGTG
CTGACCCTGT CCCCGGGCGA GGGGCTGGCG GGCACGCTCA CGCGCGACTG GGTCAAGCCG
ACGGTGGGGG CGCCGCGCTC ATGA
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| Protein sequence | MRRFASQGAR RGFTLIELLV AISVMALLAL VSWRGLDNMS RATTLNQQRA DAVLALQTTL
SQWGADLDAV TPIAQTRPID WDGRVLRLTR RGSDAGAPAM LVVAWTLRTG ADGTRWRRWQ
SPPFTTRGEW QQAWNLASSW AQEGGGGDVA LMPVANWQLY YFRENAWTPA GELPASAPNP
ANPANPIGAL VNMPDGVRLV LTLSPGEGLA GTLTRDWVKP TVGAPRS
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