| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0631 |
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| Symbol | |
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| ID | 7973616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 688000 |
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| End bp | 689172 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791238 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002942559 |
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| Protein GI | 239813649 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.276028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTTC TGCTGTCTGC CCTGACCTTG ACCGCCTCGC TGCTGGCCGC GCCCGCCGCG
ATGGCGAACA CCCCCTTGAA GATCGGTTTC CTCACCACGC TGTCGGGGCC GGGCGCCGCG
CTTGGCCAGG ACACGCGCGA CGGTTTCGCA CTCGCGATCA AACACAACGG CGATCGGCTC
GGCGGACTGC CGCTGGACCT GCAGGTCGTG GACGACCAGC TGAACCCGGA CAGCGCGCGC
CAGAGCGTGG ACCGCTTCAT CAAGCTCAAC AAGGTCGACA TACTCACCGG CGTTGTGTAC
TCCAACGTGC TGCTGCCGGT GCTGCCCACC ATTCTGGCCA GCGACACGGT CTACATCAGC
ACCAACACCG GCCCCATGGA CTACGCAGGC GCCAAGTGCA ACAAGAACTT CTTCGTCGCG
GCCTGGCAGA ACGAGGATAT CCCCCAGGCC ATGGGCCGCT TCGCTGCCAC GCGCGAGTAC
AAGCGCGTGG CCATGATCGC GGCAAACTAC CCGGGCGGCC GCGAGTCGGC GATCGGTTTC
AAGCGCAAGT ACACGGCGCC GATTGTGGAG GAGATCTACA CCAAGATGGG CCAGCTCGAC
TACGCCGCCG AGATCGCGAC CCTGCGCGCG TCCAAGCCCG ATGCGGTGTT CTTTTTTCTG
CCCGGCGGCA TGGGCGTGAA CTTCATCAAG CAATTCGAGG CCGCCGGCCT GACCAAACAG
ATCGCGCTGC TGGCGCCGGG CTACTCCGCC GATGAAGACA CACTGCGCGC GGTGGGCGAG
CCCATGGTCG GCGTCTACAA CGCCTCGCAC TGGGCAGCCG ACCTGCCCGG CGCGCTTAAC
CAGAAGTTCG TGGCGGACTT CACCAAGACC TATGGCCGTG CCCCCACCAT GACCGCGGCC
CAGGCCTACG ACACCGCTCT GCTCATCGAC CACGCTGTGC GTCGCGTCGA CGGCAAGGTG
GCCAACCGCG ATGCGCTGCG CAAGGCCCTG CGCGAGGCGC AATTCCCCTC GCTGCGCGGG
CCGTTCAAAT TCAACAACAA CCAGTTCCCG ATCCACACGC TGTACCTGCG CGTGGTGCAG
AAAGATGCGT CGGGCCGCAT CGCCAATAAG TTGGTGGGGG AGATCCTGCC CAACCACGCC
GACCCCTACG CCGCGCAATG TAAGCTGCCC TGA
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| Protein sequence | MKLLLSALTL TASLLAAPAA MANTPLKIGF LTTLSGPGAA LGQDTRDGFA LAIKHNGDRL
GGLPLDLQVV DDQLNPDSAR QSVDRFIKLN KVDILTGVVY SNVLLPVLPT ILASDTVYIS
TNTGPMDYAG AKCNKNFFVA AWQNEDIPQA MGRFAATREY KRVAMIAANY PGGRESAIGF
KRKYTAPIVE EIYTKMGQLD YAAEIATLRA SKPDAVFFFL PGGMGVNFIK QFEAAGLTKQ
IALLAPGYSA DEDTLRAVGE PMVGVYNASH WAADLPGALN QKFVADFTKT YGRAPTMTAA
QAYDTALLID HAVRRVDGKV ANRDALRKAL REAQFPSLRG PFKFNNNQFP IHTLYLRVVQ
KDASGRIANK LVGEILPNHA DPYAAQCKLP
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