Gene Vapar_0625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0625 
Symbol 
ID7973610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp681792 
End bp682463 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content65% 
IMG OID644791232 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002942553 
Protein GI239813643 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.699085 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCAGAA AAGCCGCCTC CAACGAATCG CCCTCCCTGT CGCTGGCCGA ACAGGCCTAC 
CAGGAGCTCA AGCGCCGCAT CCTCACGCTG CAGCTGCGGC CGGGCCTGTT CGTGAACGAG 
CGTGAACTCA TGGAGCTGCT CGACCTCGGC CGCATGCCGG TGCACCAAGC GGTGCACCGC 
CTGCAGGCCG AGGGCCTGAT CGAGGTCATT CCGCGCAAGG GCCTGGTGAT CCGCCCCGAT 
TCGCTGCAGG ACATGCTCAC CTTGCTCGAA GCCCGACTGG CCATGGAGCC CAACATTGCG 
GCCCTGGCGG CCACCCGCGC CACCAAGGAG CAGGTGGCCG AGCTCAAGCA GTTGGTGACC 
GAGTCCAAGC GGATCGTGAA CCAGAGCGAG CGCATGTCCT TCATGAAGCT CGACCGGGCT 
TTCCACGGGC TGATCGCGGA AGCGGCAGGC AATCAGATCC TGGCCGACGC CCAGCGCCCC 
TTGCACGAAC GCTCCGAGCT GATCTGGCAC CTGCGCGTGA TGAAAGAGGA TGGCCTGGTC 
ATCAACCAGC GCGAGCACAC GAACATCCTC AAAGCCATCA TTGAGCGCGA CGCCAACGCC 
ACGCGCAAGG CCATGGAGGA GCACCTGCGC TCCCTGCACG ACCGCATCCT GGCCGGTTCG 
CTCGAGCGCT GA
 
Protein sequence
MPRKAASNES PSLSLAEQAY QELKRRILTL QLRPGLFVNE RELMELLDLG RMPVHQAVHR 
LQAEGLIEVI PRKGLVIRPD SLQDMLTLLE ARLAMEPNIA ALAATRATKE QVAELKQLVT 
ESKRIVNQSE RMSFMKLDRA FHGLIAEAAG NQILADAQRP LHERSELIWH LRVMKEDGLV 
INQREHTNIL KAIIERDANA TRKAMEEHLR SLHDRILAGS LER