| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0555 |
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| Symbol | |
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| ID | 7972965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 615112 |
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| End bp | 615795 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791158 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002942484 |
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| Protein GI | 239813574 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.401942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTC TGATCGCCGA CGACCACCGG CTCGTCATCG AGGCGGTCAA GGCCAAGTTG
TCGGAGCTGG GGCCCGGCAT CGAGTTCGTC CTGGCGATGA GCGTCGACGA ATTGCTTGCC
GGCGCCACCG ACGAGCTCGA CCTGGCCCTG ATCGACCTCA ACATGCCCGG CGCCGACGGC
CAGGCGCACA TCGACGAAAT CCGCCGCCGC CATCCGGCCG TGCCGGTCAT CGTGCTCTCG
GGCTACGAAG ACCCGGCCAT CATGCGCAGC GCGCTCGAGC GCGGCGTGCT CGGCTTCATT
CCCAAGGCCT ACTCGCCCGA GGTCATGCTG TCGGCCGTGC GGCTGGTGCT GGCCGGCGGC
GTGTACGTGC CGCCCATGAT GCTCACGGCG CTGCCGCCCG GCATCGTGGC CGGCGTGGCG
CCCACGCAGA ACGGCGATGC GCGCTCCGCA GGCGCTTCTT CGCAGACGCT CGAGCACCTG
CGCAGCGTGC TCACCGAGCG CCAGGTCGAG GTGCTGCAAC TGCTCTCGCA GGGCAAGCCC
AACAAGCTCA TCGGCCGCAG CCTGGGCATC AGCGAAGGCA CCGTCAAGAT CCACCTGGCG
GCCATCTTCC GCGCGCTCAA CGTGCGCAAC CGCACCGAGG CCGTGGTGGC CGCGCAGGCG
CTGACCGAGG CGCAGCAGGC CTGA
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| Protein sequence | MKILIADDHR LVIEAVKAKL SELGPGIEFV LAMSVDELLA GATDELDLAL IDLNMPGADG
QAHIDEIRRR HPAVPVIVLS GYEDPAIMRS ALERGVLGFI PKAYSPEVML SAVRLVLAGG
VYVPPMMLTA LPPGIVAGVA PTQNGDARSA GASSQTLEHL RSVLTERQVE VLQLLSQGKP
NKLIGRSLGI SEGTVKIHLA AIFRALNVRN RTEAVVAAQA LTEAQQA
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